@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3968: (2016-02-22 )
MAKAPPSEPKLLLFNKPFDVLTQFNDEQGRSTLKDFIPVPGVYPAGRLDRDSEGLLLLTNDGRLQARIADPRHKLPKTYWVQVEGTPDEEQLRRLREGVTLNDGPTLPAEARLLDEPTLWERVPPVRFRKSVPTHWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGPWSLDGLGLGEWREVPARLD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U_A_2(1KSV)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




URA_A_2(1KSL)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




DTT_B_4(2OLW)
RLUE_ECOLI
[Raw transfer]




ACY_B_6(2OLW)
RLUE_ECOLI
[Raw transfer]




17 HHSearch 99.2264% -97 - C4 -2OML - RLUE_ECOLI -
2 PsiBlast_PDB 97.4864% -98 - C4 -2OML - RLUE_ECOLI -
18 HHSearch 96.7164% -94 - C4 -2OLW - RLUE_ECOLI -
1 PsiBlast_PDB 96.2864% -95 - C4 -2OLW - RLUE_ECOLI -
13 PsiBlast_CBE 96.2764% -95 - C4 -2OLW 3.4 RLUE_ECOLI
19 HHSearch 75.8135% -77 - C4 -1VIO 2.4 RSUA_HAEIN
16 PsiBlast_CBE 74.5332% -99 - C4 -3DH3 - RLUF_ECOLI -
8 PsiBlast_PDB 74.0832% -98 - C4 -3DH3 - RLUF_ECOLI -
14 PsiBlast_CBE 73.8332% -99 - C4 -3DH3 - RLUF_ECOLI -
15 PsiBlast_CBE 73.7232% -98 - C4 -3DH3 - RLUF_ECOLI -
22 HHSearch 72.9733% -90 - C4 -3DH3 - RLUF_ECOLI -
20 HHSearch 72.6436% -81 - C4 -1KSK 3.0 RSUA_ECOLI
4 PsiBlast_PDB 71.3334% -77 - C4 -1VIO 2.4 RSUA_HAEIN
32 Fugue 70.7732% -64 - C4 -1KSK 3.0 RSUA_ECOLI
6 PsiBlast_PDB 70.1534% -76 - C4 -1KSL 2.4 RSUA_ECOLI
5 PsiBlast_PDB 69.6634% -76 - C4 -1KSK 3.0 RSUA_ECOLI
3 PsiBlast_PDB 69.3435% -75 - C4 -4LAB - RLUB_ECOLI -
7 PsiBlast_PDB 67.3234% -69 - C4 -1KSV 4.0 RSUA_ECOLI
21 HHSearch 58.3633% -50 - C4 -2GML - RLUF_ECOLI -
9 PsiBlast_PDB 57.6332% -57 - C4 -2GML - RLUF_ECOLI -