@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4411: (2016-02-27 )
MVKEPNGVTRTMRRIRRIHFVGIGGAGMCGIAEVLLNLGYEVSGSDLKASAVTERLEKFGAQIFIGHQAENADGADVLVVSSAINRANPEVASALERRIPVVPRAEMLAELMRYRHGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGASRYLVAEADESDASFLHLQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPTVTYGLSEDADVRAINIRQEGMRTWFTVLRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDLYEDFVQVLGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRAGDILLCQGAGDVGGLAPQLIKNPLFAGKGGKGA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_B_5(1GQY)
MURC_HAEIN
[Raw transfer]



ANP_A_8(1P3D)
MURC_HAEIN
[Raw transfer]



ACP_A_3(1GQY)
MURC_HAEIN
[Raw transfer]



AMP_A_3(4HV4)
MURC_YERPE
[Raw transfer]



AMP_B_5(4HV4)
MURC_YERPE
[Raw transfer]



EPU_A_7(1P31)
MURC_HAEIN
[Raw transfer]



UMA_A_7(1P3D)
MURC_HAEIN
[Raw transfer]



UMA_A_7(1P3D)
MURC_HAEIN
[Raw transfer]
21 PsiBlast_CBE 98.6561%-123 - C1 -4HV4 7.1 MURC_YERPE
1 PsiBlast_PDB 98.3561%-123 - C1 -4HV4 7.7 MURC_YERPE
25 HHSearch 95.4955%-116 - C1 -1P3D 8.3 MURC_HAEIN
3 PsiBlast_PDB 95.3659%-119 - C1 -2F00 - MURC_ECOLI -
5 PsiBlast_PDB 94.1555%-118 - C1 -1P3D 9.3 MURC_HAEIN
22 PsiBlast_CBE 94.0157%-124 - C1 -1GQY 9.7 MURC_HAEIN
4 PsiBlast_PDB 93.8255%-121 - C1 -1P31 6.0 MURC_HAEIN
2 PsiBlast_PDB 93.0857%-122 - C1 -1GQY 9.4 MURC_HAEIN
8 PsiBlast_PDB 62.5529%-110 - C1 -3EAG - ? -
29 HHSearch 62.4131%-113 - C1 -3EAG - ? -
27 HHSearch 60.8822% -99 * C1 *3LK7 - MURD_STRA5 -
16 PsiBlast_PDB 56.0221%-106 - C1 -3ZM5 - ? -
17 PsiBlast_PDB 55.5421%-103 - C1 -3ZM6 - ? -
34 HHSearch 51.7714% -95 - C1 -1O5Z - ? -
32 HHSearch 51.4718%-100 - C1 -3NRS - ? -
11 PsiBlast_PDB 51.3725% -82 - C1 -4CVK - ? -
12 PsiBlast_PDB 51.2925% -79 - C1 -4CVM - ? -
31 HHSearch 50.7317% -89 - C1 -2VOS - ? -
14 PsiBlast_PDB 47.6023% -93 - C1 -1E0D - MURD_ECOLI -
10 PsiBlast_PDB 47.0126% -86 - C1 -4QDI - ? -