@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4442: (2016-02-27 )
MSHQSDLISEDILAYLGQHERKELLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKVGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARYGVQTQTRRHSFIASLLGIRHIVVAINKMDLKDFDQGVFEQIKADYLAFAEKIGLKTSSLHFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIAADRNLDDMRFPVQYVNRPNLNFRGFAGTLASGVVRKGDEVVALPSGKGSKVKSIVTFEGELEQAGPGQAVTLTLEDEIDVSRGDMLVHADNRPLVTDGFDAMLVWMAEEPMLPGKKYDIKRATSYVPGSIPSIVHKVDVNTLERTPGSELKLNEIARVKVSLDAPIALDGYEQNRTTGAFIVIDRLTNGTVGAGMIVSAPPAAHGSSAHHGSNAHVTREERAGRFGQQPATVLFSGLSGAGKSTLAYAVERKLFDMGRAVYVLDGQNLRHDLNKGLPQDRAGRTENWLRTAHVAKQFNEAGLISLCAFVAPSAEGREQARALIGAERLITVYVQASPQVCRERDPQGLYAAGEDNIPGESFPYDVPLDADLVIDTQALSVEDGVKQVLDLLRERQAI

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_D_4(1JNY)
EF1A_SULSO
[Raw transfer]




GDP_A_2(3WYA)
EF1A_PYRHO
[Raw transfer]




GDP_B_6(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_B_5(1SKQ)
EF1A_SULSO
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




5GP_C_3(1G7C)
EF1A_YEAST
[Raw transfer]




G25_C_3(1IJE)
EF1A_YEAST
[Raw transfer]




6 PsiBlast_PDB 84.4933% -72 - C5 -3VMF - EF1A_AERPE -
4 PsiBlast_PDB 84.4433% -73 - C5 -4CXG - EF1A_AERPE -
5 PsiBlast_PDB 84.4133% -73 - C5 -4CXH - EF1A_AERPE -
28 PsiBlast_CBE 84.3633% -91 - C5 -3WY9 7.7 EF1A_PYRHO
23 PsiBlast_CBE 84.3033% -70 - C5 -3WXM - EF1A_AERPE -
24 PsiBlast_CBE 84.0433% -72 - C5 -3WXM - EF1A_AERPE -
3 PsiBlast_PDB 84.0133% -74 - C5 -3WXM - EF1A_AERPE -
27 PsiBlast_CBE 84.0033% -89 - C5 -3WY9 7.6 EF1A_PYRHO
25 PsiBlast_CBE 83.7233% -73 - C5 -3WXM - EF1A_AERPE -
95 HHSearch 82.8534% -84 - C5 -3WY9 7.6 EF1A_PYRHO
26 PsiBlast_CBE 81.9333% -91 - C5 -3WYA 8.0 EF1A_PYRHO
119 Fugue 81.7929% -83 - C5 -1F60 - EF1A_YEAST -
97 HHSearch 81.1729% -81 - C5 -1F60 - EF1A_YEAST -
12 PsiBlast_PDB 79.5828% -85 - C5 -2B7C - EF1A_YEAST -
8 PsiBlast_PDB 79.4328% -84 - C5 -1G7C 4.6 EF1A_YEAST
10 PsiBlast_PDB 79.1728% -84 - C5 -1IJF - EF1A_YEAST -
9 PsiBlast_PDB 78.6528% -83 - C5 -1IJE 4.9 EF1A_YEAST
7 PsiBlast_PDB 78.5628% -84 - C5 -1F60 - EF1A_YEAST -
11 PsiBlast_PDB 77.9628% -82 - C5 -2B7B - EF1A_YEAST -
94 HHSearch 77.7234% -79 - C5 -1JNY - EF1A_SULSO -
21 PsiBlast_CBE 75.6533% -75 - C5 -1SKQ 7.0 EF1A_SULSO
22 PsiBlast_CBE 74.6133% -72 - C5 -1JNY 8.0 EF1A_SULSO