@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4749: (2016-03-01 )
MSRKYFGTDGIRGRVGEFPITPDFVLKLGWAVGMAFRRQGNCRVLIGKDTRSSGYMFESAFEAGLSASGADTLLLGPMPTPGIAYLTRTFHAEAGVVISASHNPHDDNGIKFFSGQGTKLPDDVELMIEELLDAPMTVVESARLGKVSRINDAAGRYIEFCKSSVPTSTDFNGLKVVLDCANGATYKIAPSVFRELGAEVTVLAASPNGLNINDKCGSTHLDGLQAAVVEHHADLGIAFDGDGDRVMMVDHTGAVVDGDELLFLIARDLQESGRLQGGVVGTLMSNLGLELALQELHIPFVRAKVGDRYVMAELLARNWMLGGENSGHIVCCQNTTTGDAIIAALQVLMALKHRGQTLAEARQGIRKCPQVLINVRFKGENDPLEHPSVKEASVRVTEQMGGRGRVLLRKSGTEPLVRVMVEGDEEASVRAHAEQLAKIVSEVCA

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TLA_A_3(4MRQ)
ALGC_PSEAE
[Raw transfer]



G16_X_2(2FKM)
ALGC_PSEAE
[Raw transfer]



TLA_X_3(1K2Y)
ALGC_PSEAE
[Raw transfer]



G6P_X_2(1P5G)
ALGC_PSEAE
[Raw transfer]



M6P_X_3(1PCM)
ALGC_PSEAE
[Raw transfer]



M1P_X_2(1PCJ)
ALGC_PSEAE
[Raw transfer]



G16_A_2(2FKF)
ALGC_PSEAE
[Raw transfer]



G1P_X_2(1P5D)
ALGC_PSEAE
[Raw transfer]



G1P_X_2(3BKQ)
ALGC_PSEAE
[Raw transfer]



R1P_X_2(2H4L)
ALGC_PSEAE
[Raw transfer]
25 HHSearch 95.3144%-102 - C2 -3PDK - GLMM_BACAN -
1 PsiBlast_PDB 94.9944%-101 - C2 -3PDK - GLMM_BACAN -
21 PsiBlast_CBE 93.3644%-100 - C2 -3PDK - GLMM_BACAN -
2 PsiBlast_PDB 89.1939% -98 - C2 -3I3W - GLMM_FRATT -
27 HHSearch 88.3340% -97 - C2 -3I3W - GLMM_FRATT -
28 HHSearch 81.6630% -88 * C2 *1WQA - ? -
24 PsiBlast_CBE 81.1131% -82 - C2 -1WQA - ? -
23 PsiBlast_CBE 81.1031% -83 - C2 -1WQA - ? -
3 PsiBlast_PDB 80.7031% -82 - C2 -1WQA - ? -
22 PsiBlast_CBE 80.6431% -83 - C2 -1WQA - ? -
26 HHSearch 80.2729% -88 - C2 -2F7L - ? -
47 Fugue 78.8525% -83 - C2 -1K2Y - ALGC_PSEAE -
4 PsiBlast_PDB 77.6828% -82 - C2 -2F7L - ? -
30 HHSearch 76.8226% -78 - C2 -1P5D - ALGC_PSEAE -
32 HHSearch 73.4924% -78 - C2 -3UW2 - ? -
29 HHSearch 73.4125% -75 - C2 -1TUO - ? -
18 PsiBlast_PDB 73.0827% -78 - C2 -1TUO - ? -
33 HHSearch 66.5821% -73 - C2 -2Z0F - ? -
34 HHSearch 65.6420% -70 - C2 -3PMG - PGM1_RABIT -
20 PsiBlast_PDB 63.4226% -72 - C2 -3UW2 - ? -
14 PsiBlast_PDB 60.6231% -83 - C2 -1PCM 1.8 ALGC_PSEAE
6 PsiBlast_PDB 60.0831% -79 - C2 -1K2Y 1.9 ALGC_PSEAE
13 PsiBlast_PDB 59.5731% -83 - C2 -1PCJ 2.5 ALGC_PSEAE
11 PsiBlast_PDB 59.3831% -81 - C2 -1P5D 2.9 ALGC_PSEAE
16 PsiBlast_PDB 59.0831% -81 - C2 -2H4L 2.7 ALGC_PSEAE
12 PsiBlast_PDB 59.0531% -83 - C2 -1P5G 2.5 ALGC_PSEAE
8 PsiBlast_PDB 58.8331% -78 - C2 -3BKQ 2.5 ALGC_PSEAE
5 PsiBlast_PDB 58.2732% -81 - C2 -4MRQ 3.4 ALGC_PSEAE
15 PsiBlast_PDB 57.9931% -80 - C2 -2FKM 3.0 ALGC_PSEAE
7 PsiBlast_PDB 57.9231% -81 - C2 -2FKF 3.0 ALGC_PSEAE