@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4923: (2016-03-02 )
MTLRSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTWGQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWTPSVAPKWVDRTPQ

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TAR_A_7(5AJT)
?
[Raw transfer]




RP5_A_2(5AJU)
?
[Raw transfer]




SRT_D_13(5AJT)
?
[Raw transfer]




TAR_B_9(5AJT)
?
[Raw transfer]




TAR_C_11(5AJT)
?
[Raw transfer]




EDO_A_5(2Q4D)
LOG8_ARATH
[Raw transfer]




EDO_A_7(1YDH)
LOG8_ARATH
[Raw transfer]




EDO_A_7(1YDH)
LOG8_ARATH
[Raw transfer]




UNL_A_3(3QUA)
?
[Raw transfer]




UNL_A_3(3QUA)
?
[Raw transfer]




UNL_B_4(3QUA)
?
[Raw transfer]




32 HHSearch 96.7945%-143 - C2 -1YDH 3.2 LOG8_ARATH
5 PsiBlast_PDB 95.4643%-144 - C2 -1YDH 3.2 LOG8_ARATH
22 PsiBlast_CBE 94.9040%-136 - C2 -5AJT 3.5 ?
35 HHSearch 94.5547%-144 - C2 -2A33 - LOG3_ARATH -
24 PsiBlast_CBE 94.3340%-138 - C2 -5AJT 3.4 ?
23 PsiBlast_CBE 94.2440%-135 - C2 -5AJT 2.3 ?
4 PsiBlast_PDB 94.1340%-139 - C2 -5AJU 3.3 ?
3 PsiBlast_PDB 94.1240%-140 - C2 -5AJT 3.9 ?
33 HHSearch 93.7743%-145 - C2 -1T35 - YVDD_BACSU -
36 HHSearch 93.1547%-122 - C2 -3QUA 2.8 ?
1 PsiBlast_PDB 92.8942%-143 - C2 -1T35 - YVDD_BACSU -
6 PsiBlast_PDB 92.6643%-136 - C2 -2Q4D 3.6 LOG8_ARATH
29 PsiBlast_CBE 90.4842%-128 - C2 -3SBX - LOGH_MYCMM -
26 PsiBlast_CBE 89.9542%-134 - C2 -3SBX - LOGH_MYCMM -
2 PsiBlast_PDB 89.4345%-124 - C2 -3QUA 2.8 ?
7 PsiBlast_PDB 89.4242%-131 - C2 -3SBX - LOGH_MYCMM -
31 PsiBlast_CBE 89.3642%-126 - C2 -3SBX - LOGH_MYCMM -
27 PsiBlast_CBE 89.3242%-127 - C2 -3SBX - LOGH_MYCMM -
25 PsiBlast_CBE 89.2942%-122 - C2 -3SBX - LOGH_MYCMM -
30 PsiBlast_CBE 89.1942%-125 - C2 -3SBX - LOGH_MYCMM -
21 PsiBlast_CBE 88.9545%-127 - C2 -3QUA 2.8 ?