@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5425: (2016-03-07 )
MKIGVIGGGQLGRMLALAGTPLGMNFAFLDPAPDACAASLGEHIRADYGDQEHLRQLADEVDLVTFEFESVPAETVAFLSQFVPVYPNAESLRIARDRWFEKSMFKDLGIPTPDFADVQSQADLDAAAAAIGLPAVLKTRTLGYDGKGQKVLRQPADVQGAFAELGSVPCILEGFVPFTGEVSLVAVRARDGETRFYPLVHNTHDSGILKLSVASSGHPLQALAEDYVGRVLARLDYVGVLAFEFFEVDGGLKANEIAPRVHNSGHWTIEGAECSQFENHLRAVAGLPLGSTAKVGESAMLNFIGAVPPVAQVVAVADCHLHHYGKAFKNGRKVGHATLRCADRATLQARIAEVEALIEA

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3ETH)
PURK_ECOLI
[Raw transfer]



ATP_A_3(3ETH)
PURK_ECOLI
[Raw transfer]



ADP_A_3(3V4S)
?
[Raw transfer]



ATP_B_12(4DLK)
?
[Raw transfer]



ATP_A_6(4DLK)
?
[Raw transfer]



ADP_A_3(3QFF)
?
[Raw transfer]



ADP_B_8(3ETJ)
PURK_ECOLI
[Raw transfer]



ATP_A_3(3ETH)
PURK_ECOLI
[Raw transfer]



ANP_A_2(4MA5)
?
[Raw transfer]



ATP_B_6(3V4S)
?
[Raw transfer]



ADP_A_3(3ETJ)
PURK_ECOLI
[Raw transfer]



A12_A_3(4MAM)
?
[Raw transfer]



ADP_B_4(3QFF)
?
[Raw transfer]



ADP_A_4(3ORQ)
?
[Raw transfer]



ADP_B_6(3R5H)
?
[Raw transfer]



ADP_A_3(3R5H)
?
[Raw transfer]



ADP_A_4(3ORQ)
?
[Raw transfer]



AMP_A_3(3AW8)
?
[Raw transfer]



AMP_A_3(3AW8)
?
[Raw transfer]



AMP_B_5(3AW8)
?
[Raw transfer]



AMP_A_2(4MA0)
?
[Raw transfer]



ATP_A_7(4DLK)
?
[Raw transfer]



ATP_A_8(4DLK)
?
[Raw transfer]
65 HHSearch 97.8355% -96 * C2 *3AW8 4.3 ?
1 PsiBlast_PDB 94.2754% -96 - C2 -3AW8 4.3 ?
21 PsiBlast_CBE 93.8454% -97 - C2 -3AW8 5.5 ?
3 PsiBlast_PDB 89.9341% -91 - C2 -4MA0 5.5 ?
4 PsiBlast_PDB 89.7641% -92 - C2 -4MA5 5.2 ?
2 PsiBlast_PDB 89.7141% -90 - C2 -4M9U - ? -
5 PsiBlast_PDB 89.3841% -91 - C2 -4MAM 7.1 ?
6 PsiBlast_PDB 87.3339% -88 - C2 -4E4T - ? -
22 PsiBlast_CBE 86.9639% -91 - C2 -4E4T - ? -
66 HHSearch 86.4138% -89 - C2 -3Q2O - ? -
69 HHSearch 83.7033% -90 - C2 -3AX6 - ? -
64 HHSearch 81.8433% -87 - C2 -3ORQ 5.2 ?
7 PsiBlast_PDB 81.7139% -85 - C2 -4DLK 7.0 ?
11 PsiBlast_PDB 81.1539% -84 - C2 -3V4S 7.1 ?
10 PsiBlast_PDB 81.1439% -84 - C2 -3R5H 6.3 ?
24 PsiBlast_CBE 80.8739% -86 - C2 -3R5H 5.9 ?
9 PsiBlast_PDB 80.7639% -86 - C2 -3QFF 6.5 ?
26 PsiBlast_CBE 80.5539% -86 - C2 -3Q2O - ? -
8 PsiBlast_PDB 80.3939% -86 - C2 -3Q2O - ? -
27 PsiBlast_CBE 80.2439% -85 - C2 -3V4S 7.5 ?
17 PsiBlast_PDB 80.0132% -84 - C2 -3ORQ 5.2 ?
25 PsiBlast_CBE 79.9239% -87 - C2 -3QFF 5.1 ?
23 PsiBlast_CBE 79.7939% -85 - C2 -4DLK 6.7 ?
14 PsiBlast_PDB 79.4938% -83 - C2 -3ETH 7.2 PURK_ECOLI
15 PsiBlast_PDB 79.2238% -84 - C2 -3ETJ 7.0 PURK_ECOLI
29 PsiBlast_CBE 78.3938% -85 - C2 -3ETH 7.6 PURK_ECOLI
28 PsiBlast_CBE 78.0838% -89 - C2 -3ETJ 6.1 PURK_ECOLI
72 HHSearch 77.8839% -79 - C2 -3ETH 7.2 PURK_ECOLI