@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00026_BACE1_: (2014-08-10 )
MAQALPWLLLWMGAGVLPAHGTQHGIRLPLRSGLGGAPLGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYNIPQTDESTLMTIAYVMAAICALFMLPLCLMVCQWCCLRCLRQQHDDFADDISLLK

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

Z76_A_4(3LPK)
BACE1_HUMAN
[Raw transfer]




Z74_A_4(3LPI)
BACE1_HUMAN
[Raw transfer]




Z76_B_6(3LPK)
BACE1_HUMAN
[Raw transfer]




Z74_B_6(3LPI)
BACE1_HUMAN
[Raw transfer]




Z75_A_4(3LPJ)
BACE1_HUMAN
[Raw transfer]




3HF_B_6(3OHF)
BACE1_HUMAN
[Raw transfer]




3HF_A_3(3OHF)
BACE1_HUMAN
[Raw transfer]




3HH_A_3(3OHH)
BACE1_HUMAN
[Raw transfer]




3HH_B_7(3OHH)
BACE1_HUMAN
[Raw transfer]




Z75_B_6(3LPJ)
BACE1_HUMAN
[Raw transfer]




LIJ_B_8(2HIZ)
BACE1_HUMAN
[Raw transfer]




PB7_B_5(3SKF)
BACE1_HUMAN
[Raw transfer]




MR0_B_9(2P83)
BACE1_HUMAN
[Raw transfer]




MR0_C_10(2P83)
BACE1_HUMAN
[Raw transfer]




10J_B_4(4H1E)
BACE1_HUMAN
[Raw transfer]




LIJ_C_9(2HIZ)
BACE1_HUMAN
[Raw transfer]




PB7_A_3(3SKF)
BACE1_HUMAN
[Raw transfer]




10V_B_7(4H3I)
BACE1_HUMAN
[Raw transfer]




CS5_A_3(3L58)
BACE1_HUMAN
[Raw transfer]




10Q_A_4(4H3G)
BACE1_HUMAN
[Raw transfer]




10O_B_7(4H3F)
BACE1_HUMAN
[Raw transfer]




10Q_B_7(4H3G)
BACE1_HUMAN
[Raw transfer]




10J_A_3(4H1E)
BACE1_HUMAN
[Raw transfer]




0KP_A_3(4DJW)
BACE1_HUMAN
[Raw transfer]




0KP_B_5(4DJW)
BACE1_HUMAN
[Raw transfer]




10O_A_4(4H3F)
BACE1_HUMAN
[Raw transfer]




BDW_A_4(3L5E)
BACE1_HUMAN
[Raw transfer]




10V_A_4(4H3I)
BACE1_HUMAN
[Raw transfer]




10W_B_7(4H3J)
BACE1_HUMAN
[Raw transfer]




10W_A_4(4H3J)
BACE1_HUMAN
[Raw transfer]




0KQ_B_5(4DJX)
BACE1_HUMAN
[Raw transfer]




0KM_B_5(4DJV)
BACE1_HUMAN
[Raw transfer]




0KR_A_3(4DJY)
BACE1_HUMAN
[Raw transfer]




0KR_B_5(4DJY)
BACE1_HUMAN
[Raw transfer]




0KM_A_3(4DJV)
BACE1_HUMAN
[Raw transfer]




13W_B_7(4HA5)
BACE1_HUMAN
[Raw transfer]




13W_A_4(4HA5)
BACE1_HUMAN
[Raw transfer]




0KQ_A_3(4DJX)
BACE1_HUMAN
[Raw transfer]




BDV_A_4(3L5D)
BACE1_HUMAN
[Raw transfer]




1W0_A_2(4L7G)
BACE1_HUMAN
[Raw transfer]




0KK_A_3(4DJU)
BACE1_HUMAN
[Raw transfer]




0KK_B_5(4DJU)
BACE1_HUMAN
[Raw transfer]




BDX_A_4(3L5F)
BACE1_HUMAN
[Raw transfer]




BDQ_A_4(3L5C)
BACE1_HUMAN
[Raw transfer]




BDO_A_4(3L5B)
BACE1_HUMAN
[Raw transfer]




BDJ_A_4(3L59)
BACE1_HUMAN
[Raw transfer]




B3P_A_3(3ZKQ)
BACE2_HUMAN
[Raw transfer]




13 PsiBlast_PDB 98.13100%-110 - C7 -3L58 11.0 BACE1_HUMAN
34 PsiBlast_CBE 97.62100%-114 - C7 -3LPJ 12.4 BACE1_HUMAN
50 PsiBlast_CBE 97.46100%-114 - C7 -4H1E 6.5 BACE1_HUMAN
42 PsiBlast_CBE 97.41100%-113 - C7 -4H3J 7.7 BACE1_HUMAN
44 PsiBlast_CBE 97.40100%-113 - C7 -4H3I 7.1 BACE1_HUMAN
19 PsiBlast_PDB 97.35100%-114 - C7 -3L5F 5.4 BACE1_HUMAN
46 PsiBlast_CBE 97.34100%-112 - C7 -4H3G 7.4 BACE1_HUMAN
31 PsiBlast_CBE 97.32100%-113 - C7 -3OHH 10.6 BACE1_HUMAN
1 PsiBlast_PDB 97.31100%-110 - C7 -3LPI 11.6 BACE1_HUMAN
33 PsiBlast_CBE 97.28100%-114 - C7 -3LPK 11.8 BACE1_HUMAN
32 PsiBlast_CBE 97.22100%-113 - C7 -3OHF 11.7 BACE1_HUMAN
35 PsiBlast_CBE 97.20100%-113 - C7 -3LPI 11.8 BACE1_HUMAN
55 PsiBlast_CBE 97.19100%-113 - C7 -4DJX 5.9 BACE1_HUMAN
53 PsiBlast_CBE 97.17100%-114 - C7 -4DJY 6.4 BACE1_HUMAN
51 PsiBlast_CBE 97.17100%-115 - C7 -4H1E 6.5 BACE1_HUMAN
20 PsiBlast_PDB 97.17100%-115 - C7 -4DJU 5.3 BACE1_HUMAN
5 PsiBlast_PDB 97.17100%-113 - C7 -3OHH 10.8 BACE1_HUMAN
54 PsiBlast_CBE 97.16100%-113 - C7 -4DJX 6.4 BACE1_HUMAN
52 PsiBlast_CBE 97.16100%-112 - C7 -4DJY 6.8 BACE1_HUMAN
60 PsiBlast_CBE 97.14100%-113 - C7 -4DJU 5.0 BACE1_HUMAN
56 PsiBlast_CBE 97.14100%-114 - C7 -4DJW 5.6 BACE1_HUMAN
18 PsiBlast_PDB 97.05100%-113 - C7 -3L5E 8.1 BACE1_HUMAN
48 PsiBlast_CBE 96.99100%-113 - C7 -4H3F 8.1 BACE1_HUMAN
71 HHSearch 96.98100%-112 - C7 -3LPJ 12.3 BACE1_HUMAN
57 PsiBlast_CBE 96.97100%-115 - C7 -4DJW 5.9 BACE1_HUMAN
3 PsiBlast_PDB 96.96100%-113 - C7 -3LPK 11.7 BACE1_HUMAN
58 PsiBlast_CBE 96.94100%-113 - C7 -4DJV 6.4 BACE1_HUMAN
40 PsiBlast_CBE 96.92100%-114 - C7 -4HA5 5.3 BACE1_HUMAN
4 PsiBlast_PDB 96.88100%-112 - C7 -3OHF 11.7 BACE1_HUMAN
43 PsiBlast_CBE 96.77100%-112 - C7 -4H3J 6.9 BACE1_HUMAN
14 PsiBlast_PDB 96.72100%-112 - C7 -3L59 4.1 BACE1_HUMAN
49 PsiBlast_CBE 96.70100%-113 - C7 -4H3F 7.7 BACE1_HUMAN
47 PsiBlast_CBE 96.68100%-112 - C7 -4H3G 7.3 BACE1_HUMAN
45 PsiBlast_CBE 96.64100%-114 - C7 -4H3I 6.1 BACE1_HUMAN
59 PsiBlast_CBE 96.63100%-113 - C7 -4DJV 6.6 BACE1_HUMAN
7 PsiBlast_PDB 96.57100%-114 - C7 -3SKF 10.9 BACE1_HUMAN
41 PsiBlast_CBE 96.56100%-112 - C7 -4HA5 5.0 BACE1_HUMAN
16 PsiBlast_PDB 96.47100%-117 - C7 -3L5C 5.0 BACE1_HUMAN
17 PsiBlast_PDB 96.46100%-115 - C7 -3L5D 4.8 BACE1_HUMAN
27 PsiBlast_CBE 96.44100%-116 - C7 -3SKF 10.9 BACE1_HUMAN
15 PsiBlast_PDB 96.38100%-115 - C7 -3L5B 3.6 BACE1_HUMAN
36 PsiBlast_CBE 95.86100%-117 - C7 -2P83 10.9 BACE1_HUMAN
73 HHSearch 95.84100%-118 * C7 *4L7G 4.4 BACE1_HUMAN
38 PsiBlast_CBE 95.73100%-117 - C7 -2HIZ 10.0 BACE1_HUMAN
39 PsiBlast_CBE 95.44100%-118 - C7 -2HIZ 10.0 BACE1_HUMAN
37 PsiBlast_CBE 95.17100%-120 - C7 -2P83 10.5 BACE1_HUMAN
72 HHSearch 83.6354%-112 - C7 -3ZKQ 2.3 BACE2_HUMAN