@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00026_BACE2_: (2014-08-10 )
MGALLRALLLPLLAQWLLRAVPVLAPAPFTLPLQVAGAANHRASTVPGLGTPELPRADGLALALEPARATANFLAMVDNLQGDSGRGYYLEMLIGTPPQKVRILVDTGSSNFAVAGAPHSYIDTYFDSESSSTYHSKGFEVTVKYTQGSWTGFVGEDLVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYAALAKPSSSLETFFDSLVAQAKIPDIFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARTSLIPEFSDGFWTGAQLACWTNSETPWAYFPKISIYLRDENASRSFRITILPQLYIQPMMGAGFNYECYRFGISSSTNALVIGATVMEGFYVVFDRAQRRVGFAVSPCAEIAGTTVSEISGPFSTEDIASNCVPAQALNEPILWIVSYALMSVCGAILLVLILLLLFPLHCRHAPRDPEVVNDESSLVRHRWK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IXS_A_2(2QZL)
BACE1_HUMAN
[Raw transfer]




WZV_B_4(3ZKI)
BACE2_HUMAN
[Raw transfer]




WZV_A_3(3ZKI)
BACE2_HUMAN
[Raw transfer]




Z75_A_4(3LPJ)
BACE1_HUMAN
[Raw transfer]




6T9_A_5(3ZLQ)
BACE2_HUMAN
[Raw transfer]




BDQ_A_4(3L5C)
BACE1_HUMAN
[Raw transfer]




6T9_B_6(3ZLQ)
BACE2_HUMAN
[Raw transfer]




1W0_A_2(4L7G)
BACE1_HUMAN
[Raw transfer]




EV0_A_4(3HVG)
BACE1_HUMAN
[Raw transfer]




BDW_A_4(3L5E)
BACE1_HUMAN
[Raw transfer]




CS5_A_3(3L58)
BACE1_HUMAN
[Raw transfer]




BDO_A_4(3L5B)
BACE1_HUMAN
[Raw transfer]




BDV_A_4(3L5D)
BACE1_HUMAN
[Raw transfer]




BDJ_A_4(3L59)
BACE1_HUMAN
[Raw transfer]




EV2_A_4(3HW1)
BACE1_HUMAN
[Raw transfer]




GOL_A_10(3MSJ)
BACE1_HUMAN
[Raw transfer]




EV3_A_4(3MSJ)
BACE1_HUMAN
[Raw transfer]




B3P_B_5(4BFB)
BACE2_HUMAN
[Raw transfer]




B3P_A_6(4BEL)
BACE2_HUMAN
[Raw transfer]




B3P_B_7(4BEL)
BACE2_HUMAN
[Raw transfer]




BAM_A_4(3PVK)
CARP2_CANAX
[Raw transfer]




B3P_A_3(3ZKQ)
BACE2_HUMAN
[Raw transfer]




B3P_A_3(3ZKG)
BACE2_HUMAN
[Raw transfer]




EDO_A_7(4AUC)
CHYM_BOVIN
[Raw transfer]




7 PsiBlast_PDB 98.6893%-138 - C7 -3ZKG 2.7 BACE2_HUMAN
21 PsiBlast_CBE 98.5993%-132 - C7 -4BFB 2.5 BACE2_HUMAN
41 HHSearch 98.3794%-132 - C7 -3ZKQ 2.4 BACE2_HUMAN
22 PsiBlast_CBE 98.1493%-133 - C7 -4BEL 2.5 BACE2_HUMAN
6 PsiBlast_PDB 97.6193%-132 - C7 -3ZLQ 4.6 BACE2_HUMAN
8 PsiBlast_PDB 97.5993%-136 - C7 -3ZKI 6.2 BACE2_HUMAN
4 PsiBlast_PDB 97.3393%-135 - C7 -4BEL 2.4 BACE2_HUMAN
25 PsiBlast_CBE 97.0993%-133 - C7 -3ZLQ 4.4 BACE2_HUMAN
26 PsiBlast_CBE 96.7593%-135 - C7 -3ZKI 6.7 BACE2_HUMAN
40 HHSearch 85.4553%-115 - C7 -3LPJ 12.2 BACE1_HUMAN
18 PsiBlast_PDB 85.2753%-122 - C7 -3L5C 5.1 BACE1_HUMAN
15 PsiBlast_PDB 85.0553%-116 - C7 -3L58 11.2 BACE1_HUMAN
13 PsiBlast_PDB 85.0053%-119 - C7 -3MSJ 4.6 BACE1_HUMAN
19 PsiBlast_PDB 84.9153%-119 - C7 -3L5D 4.9 BACE1_HUMAN
12 PsiBlast_PDB 84.7553%-122 - C7 -3HW1 3.2 BACE1_HUMAN
42 HHSearch 84.6653%-116 - C7 -4L7G 4.5 BACE1_HUMAN
16 PsiBlast_PDB 84.6053%-118 - C7 -3L59 4.1 BACE1_HUMAN
20 PsiBlast_PDB 84.4653%-119 - C7 -3L5E 7.9 BACE1_HUMAN
17 PsiBlast_PDB 84.4553%-120 - C7 -3L5B 3.6 BACE1_HUMAN
14 PsiBlast_PDB 84.3853%-121 - C7 -2QZL 10.9 BACE1_HUMAN
11 PsiBlast_PDB 84.1553%-120 - C7 -3HVG 4.0 BACE1_HUMAN