@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00061_RABP1_: (2014-08-12 )
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

REA_A_3(1CBR)
RABP1_MOUSE
[Raw transfer]




REA_A_3(2FR3)
RABP2_HUMAN
[Raw transfer]




REA_B_4(1CBR)
RABP1_MOUSE
[Raw transfer]




A80_B_2(2CBR)
RABP1_BOVIN
[Raw transfer]




REA_A_3(2G78)
RABP2_HUMAN
[Raw transfer]




G2A_A_2(4AZQ)
FABP5_MOUSE
[Raw transfer]




R12_B_2(3CBS)
RABP2_HUMAN
[Raw transfer]




REA_B_2(1CBS)
RABP2_HUMAN
[Raw transfer]




R13_B_2(2CBS)
RABP2_HUMAN
[Raw transfer]




RE9_G_7(1CBQ)
RABP2_HUMAN
[Raw transfer]




REA_A_3(3CWK)
RABP2_HUMAN
[Raw transfer]




RET_A_7(2G79)
RABP2_HUMAN
[Raw transfer]




PAM_A_2(3PPT)
?
[Raw transfer]




AZE_A_4(2G7B)
RABP2_HUMAN
[Raw transfer]




AZE_A_4(2G7B)
RABP2_HUMAN
[Raw transfer]




2AN_A_5(3WBG)
FABPH_HUMAN
[Raw transfer]




HXA_C_3(1FDQ)
FABP7_HUMAN
[Raw transfer]




RET_A_2(4I9S)
RABP2_HUMAN
[Raw transfer]




B3P_A_3(3FEL)
RABP2_HUMAN
[Raw transfer]




LMC_A_2(3FEP)
RABP2_HUMAN
[Raw transfer]




RET_A_2(4I9R)
RABP2_HUMAN
[Raw transfer]




B3P_A_5(3D97)
RABP2_HUMAN
[Raw transfer]




B3P_B_4(3FA7)
RABP2_HUMAN
[Raw transfer]




B3P_A_2(3F8A)
RABP2_HUMAN
[Raw transfer]




RET_A_2(4M7M)
RABP2_HUMAN
[Raw transfer]




RET_A_2(4M6S)
RABP2_HUMAN
[Raw transfer]




LSR_A_3(3FA6)
RABP2_HUMAN
[Raw transfer]




B3P_B_5(3FEL)
RABP2_HUMAN
[Raw transfer]




LSR_A_3(3F8A)
RABP2_HUMAN
[Raw transfer]




LSR_A_3(3F9D)
RABP2_HUMAN
[Raw transfer]




LSR_B_4(3F9D)
RABP2_HUMAN
[Raw transfer]




LSR_A_2(3CR6)
RABP2_HUMAN
[Raw transfer]




LSR_B_4(3FA6)
RABP2_HUMAN
[Raw transfer]




MES_A_3(3FEP)
RABP2_HUMAN
[Raw transfer]




B3P_A_3(3FA7)
RABP2_HUMAN
[Raw transfer]




PEG_A_4(3FEK)
RABP2_HUMAN
[Raw transfer]




EDO_A_4(4A60)
FABP9_HUMAN
[Raw transfer]




PEG_A_5(3FEK)
RABP2_HUMAN
[Raw transfer]




B3P_A_4(3FEL)
RABP2_HUMAN
[Raw transfer]




2 PsiBlast_PDB 95.65100% -88 - C7 -2CBR 7.1 RABP1_BOVIN
1 PsiBlast_PDB 94.78100% -88 - C7 -1CBR 6.9 RABP1_MOUSE
21 PsiBlast_CBE 94.61100% -88 - C7 -1CBR 6.9 RABP1_MOUSE
6 PsiBlast_PDB 91.8876% -86 - C7 -2FR3 7.0 RABP2_HUMAN
15 PsiBlast_PDB 91.8175% -88 - C7 -2G78 5.9 RABP2_HUMAN
4 PsiBlast_PDB 91.2776% -94 - C7 -2CBS 7.5 RABP2_HUMAN
19 PsiBlast_PDB 91.0474% -96 - C7 -3F9D 3.7 RABP2_HUMAN
5 PsiBlast_PDB 90.9976% -91 - C7 -3CBS 7.0 RABP2_HUMAN
16 PsiBlast_PDB 90.5275% -87 - C7 -2G79 6.3 RABP2_HUMAN
10 PsiBlast_PDB 89.8776% -84 - C7 -1CBS 7.0 RABP2_HUMAN
20 PsiBlast_PDB 89.6374% -87 - C7 -3FEL 3.6 RABP2_HUMAN
41 PsiBlast_CBE 89.2972% -85 - C7 -4I9S 5.1 RABP2_HUMAN
55 HHSearch 89.0875% -84 - C7 -2G7B 6.0 RABP2_HUMAN
35 PsiBlast_CBE 89.0872% -85 - C7 -3CWK 4.7 RABP2_HUMAN
9 PsiBlast_PDB 89.0576% -82 - C7 -1CBQ 7.3 RABP2_HUMAN
28 PsiBlast_CBE 88.9274% -81 - C7 -3CR6 3.5 RABP2_HUMAN
38 PsiBlast_CBE 88.2372% -80 - C7 -3FA6 3.4 RABP2_HUMAN
36 PsiBlast_CBE 88.0072% -80 - C7 -3FEK 3.0 RABP2_HUMAN
42 PsiBlast_CBE 87.4672% -84 - C7 -4M7M 4.8 RABP2_HUMAN
33 PsiBlast_CBE 87.2673% -83 - C7 -3FA7 3.6 RABP2_HUMAN
30 PsiBlast_CBE 87.2374% -83 - C7 -3D97 2.3 RABP2_HUMAN
43 PsiBlast_CBE 87.0672% -83 - C7 -4I9R 5.3 RABP2_HUMAN
26 PsiBlast_CBE 86.9774% -84 - C7 -3FEL 2.7 RABP2_HUMAN
40 PsiBlast_CBE 86.5473% -79 - C7 -3F8A 3.2 RABP2_HUMAN
27 PsiBlast_CBE 86.3074% -79 - C7 -3F9D 3.6 RABP2_HUMAN
37 PsiBlast_CBE 86.0072% -81 - C7 -3FA6 3.2 RABP2_HUMAN
44 PsiBlast_CBE 84.8272% -79 - C7 -4M6S 5.4 RABP2_HUMAN
39 PsiBlast_CBE 84.6973% -74 - C7 -3FEP 4.3 RABP2_HUMAN
34 PsiBlast_CBE 84.0773% -84 - C7 -3FA7 2.0 RABP2_HUMAN
69 HHSearch 69.9243% -62 - C7 -3WBG 4.5 FABPH_HUMAN
75 HHSearch 68.1840% -63 - C7 -4A60 3.3 FABP9_HUMAN
63 HHSearch 66.4935% -62 - C7 -4AZQ 5.0 FABP5_MOUSE
57 HHSearch 66.4239% -69 - C7 -1FDQ 3.8 FABP7_HUMAN
62 HHSearch 64.3142% -59 * C7 *3PPT 5.3 ?