@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00067_CP3A5_: (2014-08-13 )
MDLIPNLAVETWLLLAVSLVLLYLYGTRTHGLFKRLGIPGPTPLPLLGNVLSYRQGLWKFDTECYKKYGKMWGTYEGQLPVLAITDPDVIRTVLVKECYSVFTNRRSLGPVGFMKSAISLAEDEEWKRIRSLLSPTFTSGKLKEMFPIIAQYGDVLVRNLRREAEKGKPVTLKDIFGAYSMDVITGTSFGVNIDSLNNPQDPFVESTKKFLKFGFLDPLFLSIILFPFLTPVFEALNVSLFPKDTINFLSKSVNRMKKSRLNDKQKHRLDFLQLMIDSQNSKETESHKALSDLELAAQSIIFIFAGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYWTEPEEFRPERFSKKKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLDTQGLLQPEKPIVLKVDSRDGTLSGE

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIT_A_8(3NXU)
CP3A4_HUMAN
[Raw transfer]




Z9Z_A_3(4I4H)
CP3A4_HUMAN
[Raw transfer]




RIT_B_12(3NXU)
CP3A4_HUMAN
[Raw transfer]




Z8Z_A_3(4I4G)
CP3A4_HUMAN
[Raw transfer]




6AW_A_3(4K9V)
CP3A4_HUMAN
[Raw transfer]




08Y_A_3(3UA1)
CP3A4_HUMAN
[Raw transfer]




8AW_A_3(4K9X)
CP3A4_HUMAN
[Raw transfer]




D0R_A_3(3TJS)
CP3A4_HUMAN
[Raw transfer]




1RD_A_3(4K9T)
CP3A4_HUMAN
[Raw transfer]




1RD_A_4(4K9T)
CP3A4_HUMAN
[Raw transfer]




MYT_A_2(1W0G)
CP3A4_HUMAN
[Raw transfer]




HEM_A_3(1W0F)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(3TJS)
CP3A4_HUMAN
[Raw transfer]




HEM_A_7(3NXU)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4I4H)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(1TQN)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(3UA1)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4I3Q)
CP3A4_HUMAN
[Raw transfer]




HEM_B_11(3NXU)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4K9V)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4K9U)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4I4G)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4K9T)
CP3A4_HUMAN
[Raw transfer]




HEM_A_2(4K9X)
CP3A4_HUMAN
[Raw transfer]




HEM_A_3(1W0G)
CP3A4_HUMAN
[Raw transfer]




5AW_A_4(4K9U)
CP3A4_HUMAN
[Raw transfer]




5AW_A_3(4K9U)
CP3A4_HUMAN
[Raw transfer]




SRO_A_4(4DUE)
CPXB_BACME
[Raw transfer]




DMS_A_5(3NXU)
CP3A4_HUMAN
[Raw transfer]




DMS_A_6(3NXU)
CP3A4_HUMAN
[Raw transfer]




DMS_B_10(3NXU)
CP3A4_HUMAN
[Raw transfer]




STR_A_2(1W0F)
CP3A4_HUMAN
[Raw transfer]




16 PsiBlast_PDB 97.6984%-119 - C2 -3NXU 12.3 CP3A4_HUMAN
3 PsiBlast_PDB 97.3983%-117 - C2 -4I3Q 12.4 CP3A4_HUMAN
24 PsiBlast_CBE 97.1084%-116 - C2 -3NXU 12.2 CP3A4_HUMAN
2 PsiBlast_PDB 97.0783%-117 - C2 -3TJS 12.3 CP3A4_HUMAN
11 PsiBlast_PDB 96.9983%-115 - C2 -1TQN 12.7 CP3A4_HUMAN
1 PsiBlast_PDB 96.8183%-119 - C2 -3UA1 12.3 CP3A4_HUMAN
5 PsiBlast_PDB 96.8083%-117 - C2 -4I4H 12.4 CP3A4_HUMAN
4 PsiBlast_PDB 96.7983%-115 - C2 -4I4G 12.5 CP3A4_HUMAN
6 PsiBlast_PDB 96.6283%-119 - C2 -4K9T 12.4 CP3A4_HUMAN
13 PsiBlast_PDB 96.5284%-115 - C2 -1W0F 12.4 CP3A4_HUMAN
8 PsiBlast_PDB 96.3283%-120 - C2 -4K9V 12.3 CP3A4_HUMAN
14 PsiBlast_PDB 95.7684%-114 - C2 -1W0G 12.2 CP3A4_HUMAN
10 PsiBlast_PDB 95.7083%-119 - C2 -4K9X 12.2 CP3A4_HUMAN
7 PsiBlast_PDB 95.0983%-120 - C2 -4K9U 12.2 CP3A4_HUMAN
18 PsiBlast_PDB 58.6530% -87 - C2 -4DUE 3.4 CPXB_BACME