@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00068_PA2A1_: (2014-08-14 )
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKLGCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GEL_A_7(1POB)
PA2A1_NAJAT
[Raw transfer]




GEL_B_8(1POB)
PA2A1_NAJAT
[Raw transfer]




OIN_A_3(3OSH)
PA2A3_NAJSG
[Raw transfer]




AIN_A_2(1OXR)
PA2A3_NAJSG
[Raw transfer]




NFL_A_3(1TD7)
PA2A3_NAJSG
[Raw transfer]




ANN_A_2(3NJU)
PA2A3_NAJSG
[Raw transfer]




MPD_D_4(1JLT)
PA2B_VIPAE
[Raw transfer]




MRD_A_4(1G4I)
PA21B_BOVIN
[Raw transfer]




EOH_A_3(3Q4Y)
PA2A3_NAJSG
[Raw transfer]




MIY_A_4(2WQ5)
PA2A2_NAJNA
[Raw transfer]




ACY_A_4(1SZ8)
PA2A3_NAJSG
[Raw transfer]




MRD_A_5(1G4I)
PA21B_BOVIN
[Raw transfer]




EOH_A_4(1YXH)
PA2A4_NAJSG
[Raw transfer]




ACY_A_4(1YXL)
PA2A3_NAJSG
[Raw transfer]




EOH_A_5(1YXH)
PA2A4_NAJSG
[Raw transfer]




EDO_A_3(3V9M)
PA2BB_PSEAU
[Raw transfer]




MPD_A_7(1G4I)
PA21B_BOVIN
[Raw transfer]




CHAIN_B_2(3JQL)
PA2A3_NAJSG
[Raw transfer]

-

IPA_A_3(1GMZ)
PA2B3_BOTPI
[Raw transfer]




CHAIN_P_2(3GCI)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_B_2(2G58)
PA2B8_DABRR
[Raw transfer]

-

HEZ_A_13(1M8T)
PA2A2_OPHHA
[Raw transfer]




CHAIN_B_2(3JTI)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_B_2(1MF4)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_B_2(3JQ5)
PA2A3_NAJSG
[Raw transfer]

-

PEG_A_8(3V9M)
PA2BB_PSEAU
[Raw transfer]




CHAIN_P_2(1T37)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_P_2(1ZM6)
PA2A3_NAJSG
[Raw transfer]

-

1 PsiBlast_PDB 95.1778%-133 - C4 -1POB 7.3 PA2A1_NAJAT
11 PsiBlast_CBE 93.9673%-131 - C4 -1TD7 4.7 PA2A3_NAJSG
4 PsiBlast_PDB 93.5475%-125 - C4 -2WQ5 3.9 PA2A2_NAJNA
13 PsiBlast_CBE 93.2773%-136 - C4 -1OXR 2.9 PA2A3_NAJSG
5 PsiBlast_CBE 92.6078%-130 - C4 -1POB 7.3 PA2A1_NAJAT
10 PsiBlast_CBE 92.4673%-139 - C4 -1YXL 3.4 PA2A3_NAJSG
12 PsiBlast_CBE 92.0673%-138 - C4 -1SZ8 3.4 PA2A3_NAJSG
14 PsiBlast_CBE 91.6472%-134 - C4 -3Q4Y 3.2 PA2A3_NAJSG
17 PsiBlast_CBE 91.3672%-130 - C4 -3JTI 3.5 PA2A3_NAJSG
22 PsiBlast_CBE 91.2772%-132 - C4 -1YXH 3.2 PA2A4_NAJSG
15 PsiBlast_CBE 91.2572%-138 - C4 -3OSH 4.7 PA2A3_NAJSG
41 HHSearch 90.8858%-129 - C4 -3V9M 2.6 PA2BB_PSEAU
18 PsiBlast_CBE 90.7772%-132 - C4 -3JQL 5.2 PA2A3_NAJSG
19 PsiBlast_CBE 90.1872%-135 - C4 -3JQ5 6.4 PA2A3_NAJSG
20 PsiBlast_CBE 90.1172%-134 - C4 -1MF4 4.8 PA2A3_NAJSG
23 PsiBlast_CBE 90.0372%-133 - C4 -1ZM6 2.5 PA2A3_NAJSG
24 PsiBlast_CBE 89.9072%-133 - C4 -1T37 3.1 PA2A3_NAJSG
16 PsiBlast_CBE 89.6172%-130 - C4 -3NJU 3.3 PA2A3_NAJSG
25 PsiBlast_CBE 89.2772%-126 - C4 -3GCI 5.2 PA2A3_NAJSG
39 HHSearch 84.5660%-120 * C4 *1M8T 2.1 PA2A2_OPHHA
42 HHSearch 79.7455%-120 - C4 -1G4I 3.0 PA21B_BOVIN
53 HHSearch 74.4138%-127 - C4 -1GMZ 2.5 PA2B3_BOTPI
51 HHSearch 74.2445%-132 - C4 -1JLT 2.8 PA2B_VIPAE
48 HHSearch 74.1039%-118 - C4 -2G58 1.1 PA2B8_DABRR