@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_AAPK2_: (2014-08-14 )
MAEKQKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEVEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAQMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSIATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQDQLAVAYHLIIDNRRIMNQASEFYLASSPPTGSFMDDMAMHIPPGLKPHPERMPPLIADSPKARCPLDALNTTKPKSLAVKKAKWHLGIRSQSKPYDIMAEVYRAMKQLDFEWKVVNAYHLRVRRKNPVTGNYVKMSLQLYLVDNRSYLLDFKSIDDEVVEQRSGSSTPQRSCSAAGLHRPRSSVDSSTAENHSLSGSLTGSLTGSTLSSASPRLGSHTMDFFEMCASLITALAR

Atome Classification :

(12 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(2YEX)
CHK1_HUMAN
[Raw transfer]




STU_A_5(4CFH)
AAPK1_RAT
[Raw transfer]




ANP_A_2(4BL1)
MELK_HUMAN
[Raw transfer]




ADP_E_6(1RDQ)
KAPCA_MOUSE
[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




STU_B_2(1XJD)

[Raw transfer]




82B_A_2(4BKY)
MELK_HUMAN
[Raw transfer]




STU_A_7(1NXK)
MAPK2_HUMAN
[Raw transfer]




07U_A_2(3TXO)

[Raw transfer]




YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]




GOL_A_7(2YEX)
CHK1_HUMAN
[Raw transfer]




MES_A_2(2Y0A)
DAPK1_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




CHAIN_E_5(3IEC)
MARK2_HUMAN
[Raw transfer]

-

3 PsiBlast_PDB 80.1980%-127 - C1 -4CFH 8.3 AAPK1_RAT
6 PsiBlast_PDB 65.5598%-133 - C1 -3AQV 8.2 AAPK2_HUMAN
17 PsiBlast_PDB 59.5944%-126 - C1 -3IEC 8.1 MARK2_HUMAN
36 HHSearch 56.7042%-114 - C1 -4BKY 7.9 MELK_HUMAN
39 HHSearch 51.6137%-114 - C1 -4GV1 7.2 AKT1_HUMAN
20 PsiBlast_PDB 51.1946%-112 - C1 -4BL1 6.5 MELK_HUMAN
46 HHSearch 49.5634%-109 - C1 -1RDQ 6.8 KAPCA_MOUSE
47 HHSearch 47.0437%-113 - C1 -3TXO 6.2
45 HHSearch 46.7334%-110 - C1 -1XJD 9.0
44 HHSearch 45.6734%-108 - C1 -2Y0A 2.4 DAPK1_HUMAN
43 HHSearch 44.5235%-105 - C1 -2YEX 6.3 CHK1_HUMAN
51 HHSearch 42.3835%-110 - C1 -1NXK 8.3 MAPK2_HUMAN