@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_AVR2A_: (2014-08-14 )
MGAAAKLAFAVFLISCSSGAILGRSETQECLFFNANWEKDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCVEKKDSPEVYFCCCEGNMCNEKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLMLIAGIVICAFWVYRHHKMAYPPVLVPTQDPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLTNIITTEDIVTVVTMVTNVDFPPKESSL

Atome Classification :

(19 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_B_10(3SOC)
AVR2A_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




QIG_A_2(3GXL)
TGFR1_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




ZZG_A_2(2WOT)
TGFR1_HUMAN
[Raw transfer]




855_A_2(3HMM)
TGFR1_HUMAN
[Raw transfer]




TAK_B_17(3Q4T)
AVR2A_HUMAN
[Raw transfer]




TAK_A_3(3Q4T)
AVR2A_HUMAN
[Raw transfer]




PY1_C_3(1PY5)
TGFR1_HUMAN
[Raw transfer]




LDN_A_5(3MDY)
BMR1B_HUMAN
[Raw transfer]




085_A_2(3TZM)
TGFR1_HUMAN
[Raw transfer]




LDN_A_5(3Q4U)
ACVR1_HUMAN
[Raw transfer]




ZZF_A_3(2WOU)
TGFR1_HUMAN
[Raw transfer]




A3F_A_17(3MTF)
ACVR1_HUMAN
[Raw transfer]




580_B_2(1RW8)
TGFR1_HUMAN
[Raw transfer]




TAK_A_10(4C02)
ACVR1_HUMAN
[Raw transfer]




6OJ_B_8(4ASX)
AVR2A_HUMAN
[Raw transfer]




6OJ_A_3(4ASX)
AVR2A_HUMAN
[Raw transfer]




TAK_A_3(3H9R)
ACVR1_HUMAN
[Raw transfer]




ADE_A_4(2QLU)
AVR2B_HUMAN
[Raw transfer]




23 PsiBlast_CBE 98.78100%-106 - C1 -3Q4T 7.0 AVR2A_HUMAN
22 PsiBlast_CBE 98.20100%-105 - C1 -3SOC 7.5 AVR2A_HUMAN
21 PsiBlast_CBE 97.26100%-101 - C1 -4ASX 5.6 AVR2A_HUMAN
3 PsiBlast_PDB 97.21100%-106 - C1 -4ASX 5.7 AVR2A_HUMAN
1 PsiBlast_PDB 95.33100% -99 - C1 -3Q4T 7.8 AVR2A_HUMAN
37 HHSearch 95.2597% -96 - C1 -3SOC 7.0 AVR2A_HUMAN
4 PsiBlast_PDB 86.9476%-101 - C1 -2QLU 3.1 AVR2B_HUMAN
13 PsiBlast_PDB 74.2240% -93 - C1 -2WOT 9.0 TGFR1_HUMAN
8 PsiBlast_PDB 72.7640% -94 - C1 -3TZM 7.7 TGFR1_HUMAN
14 PsiBlast_PDB 72.6340% -94 - C1 -2WOU 6.6 TGFR1_HUMAN
18 PsiBlast_PDB 72.4740% -93 - C1 -3H9R 4.8 ACVR1_HUMAN
19 PsiBlast_PDB 72.2940% -89 - C1 -4C02 7.1 ACVR1_HUMAN
11 PsiBlast_PDB 72.2940% -93 - C1 -1RW8 7.3 TGFR1_HUMAN
40 HHSearch 72.0240% -90 - C1 -3Q4U 8.6 ACVR1_HUMAN
10 PsiBlast_PDB 71.9040% -95 - C1 -3HMM 8.4 TGFR1_HUMAN
15 PsiBlast_PDB 71.6440% -98 - C1 -3MDY 8.6 BMR1B_HUMAN
9 PsiBlast_PDB 71.5840% -91 - C1 -3GXL 7.9 TGFR1_HUMAN
20 PsiBlast_PDB 71.4940% -82 - C1 -3MTF 7.0 ACVR1_HUMAN
12 PsiBlast_PDB 69.9440% -90 - C1 -1PY5 6.2 TGFR1_HUMAN