@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_AVR2B_: (2014-08-14 )
MTAPWVALALLWGSLCAGSGRGEAETRECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLPEAGGPEVTYEPPPTAPTLLTVLAYSLLPIGGLSLIVLLAFWMYRHRKPPYGHVDIHEDPGPPPPSPLVGLKPLQLLEIKARGRFGCVWKAQLMNDFVAVKIFPLQDKQSWQSEREIFSTPGMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYMLPFEEEIGQHPSLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAEARLSAGCVEERVSLIRRSVNGTTSDCLVSLVTSVTNVDLPPKESSI

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_B_10(3SOC)
AVR2A_HUMAN
[Raw transfer]




QIG_A_2(3GXL)
TGFR1_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




GVD_A_3(3SOC)
AVR2A_HUMAN
[Raw transfer]




ZZG_A_2(2WOT)
TGFR1_HUMAN
[Raw transfer]




855_A_2(3HMM)
TGFR1_HUMAN
[Raw transfer]




TAK_B_17(3Q4T)
AVR2A_HUMAN
[Raw transfer]




TAK_A_3(3Q4T)
AVR2A_HUMAN
[Raw transfer]




LDN_A_5(3MDY)
BMR1B_HUMAN
[Raw transfer]




PY1_C_3(1PY5)
TGFR1_HUMAN
[Raw transfer]




LDN_A_5(3Q4U)
ACVR1_HUMAN
[Raw transfer]




085_A_2(3TZM)
TGFR1_HUMAN
[Raw transfer]




ZZF_A_3(2WOU)
TGFR1_HUMAN
[Raw transfer]




TAK_A_10(4C02)
ACVR1_HUMAN
[Raw transfer]




6OJ_B_8(4ASX)
AVR2A_HUMAN
[Raw transfer]




580_B_2(1RW8)
TGFR1_HUMAN
[Raw transfer]




TAK_A_3(3H9R)
ACVR1_HUMAN
[Raw transfer]




6OJ_A_3(4ASX)
AVR2A_HUMAN
[Raw transfer]




ADE_A_4(2QLU)
AVR2B_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




1 PsiBlast_PDB 98.3898%-104 - C1 -2QLU 3.1 AVR2B_HUMAN
4 PsiBlast_PDB 90.9677%-102 - C1 -4ASX 5.7 AVR2A_HUMAN
21 PsiBlast_CBE 90.2577%-100 - C1 -4ASX 5.7 AVR2A_HUMAN
22 PsiBlast_CBE 90.2277%-101 - C1 -3SOC 7.6 AVR2A_HUMAN
34 HHSearch 89.6775% -96 - C1 -3SOC 6.9 AVR2A_HUMAN
23 PsiBlast_CBE 89.4877%-103 - C1 -3Q4T 7.0 AVR2A_HUMAN
2 PsiBlast_PDB 89.2777% -98 - C1 -3Q4T 7.6 AVR2A_HUMAN
6 PsiBlast_PDB 77.5139% -95 - C1 -2WOT 9.0 TGFR1_HUMAN
7 PsiBlast_PDB 76.6439% -96 - C1 -2WOU 6.6 TGFR1_HUMAN
12 PsiBlast_PDB 76.3739% -94 - C1 -1RW8 7.3 TGFR1_HUMAN
37 HHSearch 76.2538% -91 - C1 -3Q4U 8.6 ACVR1_HUMAN
8 PsiBlast_PDB 75.9239% -96 - C1 -3TZM 7.7 TGFR1_HUMAN
19 PsiBlast_PDB 75.8938% -92 - C1 -3H9R 4.9 ACVR1_HUMAN
20 PsiBlast_PDB 75.4038% -89 - C1 -4C02 7.1 ACVR1_HUMAN
14 PsiBlast_PDB 75.3539% -97 - C1 -3HMM 8.3 TGFR1_HUMAN
15 PsiBlast_PDB 74.7639% -95 - C1 -3MDY 8.5 BMR1B_HUMAN
13 PsiBlast_PDB 74.5639% -92 - C1 -3GXL 8.0 TGFR1_HUMAN
5 PsiBlast_PDB 73.8639% -92 - C1 -1PY5 6.2 TGFR1_HUMAN