@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDK16_: (2014-08-15 )
MDRMKKIKRQLSMTLRGGRGIDKTNGAPEQIGLDESGGGGGSDPGEAPTRAAPGELRSARGPLSSAPEIVHEDLKMGSDGESDQASATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPIFDKPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEIQLQKEASLRSSSMPDSGRPAFRVVDTEF

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EZV_A_2(3EZV)
CDK2_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




EZR_A_2(3EZR)
CDK2_HUMAN
[Raw transfer]




ANP_C_3(1J1B)
GSK3B_HUMAN
[Raw transfer]




ATP_A_5(4EOQ)
CDK2_HUMAN
[Raw transfer]




4SP_A_5(2IW9)
CDK2_HUMAN
[Raw transfer]




ADP_A_4(3NIZ)
?
[Raw transfer]




N20_A_5(1OI9)
CDK2_HUMAN
[Raw transfer]




ATP_E_5(1UA2)
CDK7_HUMAN
[Raw transfer]




N76_A_5(1OIU)
CDK2_HUMAN
[Raw transfer]




ADP_A_4(2B9H)
FUS3_YEAST
[Raw transfer]




4SP_A_5(2IW8)
CDK2_HUMAN
[Raw transfer]




QQ2_A_5(2IW6)
CDK2_HUMAN
[Raw transfer]




N41_A_5(1OIY)
CDK2_HUMAN
[Raw transfer]




T7Z_A_5(4BCM)
CDK2_HUMAN
[Raw transfer]




ST8_A_5(1OGU)
CDK2_HUMAN
[Raw transfer]




TJF_A_5(4BCQ)
CDK2_HUMAN
[Raw transfer]




ALH_A_5(1UNG)
CDK5_HUMAN
[Raw transfer]




RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




1CK_A_2(4EK4)
CDK2_HUMAN
[Raw transfer]




JYM_A_5(4CFN)
CDK2_HUMAN
[Raw transfer]




0SR_A_3(4F6U)
CDK8_HUMAN
[Raw transfer]




20 PsiBlast_PDB 81.9155%-108 - C1 -2IW9 6.1 CDK2_HUMAN
12 PsiBlast_PDB 81.3555%-108 - C1 -1OI9 6.3 CDK2_HUMAN
11 PsiBlast_PDB 80.3955%-104 - C1 -1OGU 6.0 CDK2_HUMAN
19 PsiBlast_PDB 80.0955%-104 - C1 -2IW6 7.5 CDK2_HUMAN
15 PsiBlast_PDB 80.0855%-107 - C1 -4CFN 4.8 CDK2_HUMAN
5 PsiBlast_PDB 79.8257%-106 - C1 -1UNL 6.5 CDK5_HUMAN
8 PsiBlast_PDB 79.6555%-107 - C1 -2IW8 6.6 CDK2_HUMAN
18 PsiBlast_PDB 79.5655%-107 - C1 -4BCM 6.0 CDK2_HUMAN
13 PsiBlast_PDB 79.3955%-108 - C1 -1OIU 6.1 CDK2_HUMAN
17 PsiBlast_PDB 79.3855%-112 - C1 -4BCQ 4.9 CDK2_HUMAN
14 PsiBlast_PDB 79.3455%-105 - C1 -1OIY 6.1 CDK2_HUMAN
16 PsiBlast_PDB 79.3155%-107 - C1 -4EOQ 4.2 CDK2_HUMAN
42 HHSearch 78.7859%-103 * C1 *4AU8 5.0 CDK5_HUMAN
3 PsiBlast_PDB 78.7757%-110 - C1 -1UNG 5.1 CDK5_HUMAN
9 PsiBlast_PDB 78.5555%-119 - C1 -3EZR 7.0 CDK2_HUMAN
10 PsiBlast_PDB 78.5155%-114 - C1 -3EZV 7.0 CDK2_HUMAN
45 HHSearch 77.4754%-104 - C1 -3NIZ 4.8 ?
48 HHSearch 73.3134% -97 - C1 -2B9H 5.6 FUS3_YEAST
34 HHSearch 70.6535% -97 - C1 -3N9X - ?
39 HHSearch 68.1632% -92 - C1 -1J1B 4.3 GSK3B_HUMAN
51 HHSearch 64.9539%-106 - C1 -4F6U 9.1 CDK8_HUMAN
50 HHSearch 63.5937%-104 - C1 -4BGQ 8.0 CDKL5_HUMAN
33 HHSearch 62.0340% -93 - C1 -1UA2 5.1 CDK7_HUMAN
49 HHSearch 58.8834%-110 - C1 -2FST - MK14_HUMAN
37 HHSearch 33.6555% 15 - C1 -4EK4 Error CDK2_HUMAN