@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDK4_H: (2014-08-15 )
MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNPE

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LQQ_B_5(2EUF)
CDK6_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




ANP_C_3(1J1B)
GSK3B_HUMAN
[Raw transfer]




ANP_A_5(4IC7)
MK07_HUMAN
[Raw transfer]




0RS_A_2(4EZ5)
CDK6_HUMAN
[Raw transfer]




3NV_A_2(3NUX)
CDK6_HUMAN
[Raw transfer]




ATP_E_5(1UA2)
CDK7_HUMAN
[Raw transfer]




4AU_A_2(4AUA)
CDK6_HUMAN
[Raw transfer]




2PU_B_2(1GIJ)
CDK2_HUMAN
[Raw transfer]




FSE_C_3(1XO2)
CDK6_HUMAN
[Raw transfer]




GOL_A_4(3N9X)
?
[Raw transfer]




1PU_B_2(1GII)
CDK2_HUMAN
[Raw transfer]




4SP_A_5(2IW8)
CDK2_HUMAN
[Raw transfer]




AP9_B_4(2F2C)
CDK6_HUMAN
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




DMS_A_5(3QYZ)
MK01_RAT
[Raw transfer]




7 PsiBlast_PDB 86.9669%-131 - C1 -1XO2 5.8 CDK6_HUMAN
8 PsiBlast_PDB 86.7169%-132 - C1 -2EUF 8.2 CDK6_HUMAN
9 PsiBlast_PDB 85.0469%-133 - C1 -2F2C 6.0 CDK6_HUMAN
16 PsiBlast_PDB 84.3670%-138 - C1 -4EZ5 8.0 CDK6_HUMAN
14 PsiBlast_PDB 83.8970%-133 - C1 -3NUX 7.3 CDK6_HUMAN
15 PsiBlast_PDB 82.3470%-135 - C1 -4AUA 4.9 CDK6_HUMAN
20 PsiBlast_PDB 81.3145%-126 - C1 -2IW8 6.9 CDK2_HUMAN
17 PsiBlast_PDB 77.1246%-132 - C1 -1GII 5.9 CDK2_HUMAN
18 PsiBlast_PDB 75.1146%-128 - C1 -1GIJ 7.0 CDK2_HUMAN
48 HHSearch 73.7046%-120 - C1 -4AU8 5.3 CDK5_HUMAN
33 HHSearch 70.7939%-101 - C1 -3N9X 3.5 ?
50 HHSearch 70.0736%-108 - C1 -3QYZ 3.7 MK01_RAT
51 HHSearch 69.1130%-121 - C1 -1J1B 4.4 GSK3B_HUMAN
52 HHSearch 66.9435%-109 - C1 -4BGQ 8.0 CDKL5_HUMAN
39 HHSearch 64.5235%-110 * C1 *4IC7 4.9 MK07_HUMAN
34 HHSearch 62.6738%-108 - C1 -1UA2 4.9 CDK7_HUMAN
46 HHSearch 61.4636%-114 - C1 -2FST 2.9 MK14_HUMAN