@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDK5_H: (2014-08-15 )
MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFCPP

Atome Classification :

(19 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_E_5(1UA2)
CDK7_HUMAN
[Raw transfer]




SU9_A_3(3PY1)
CDK2_HUMAN
[Raw transfer]




ADP_A_4(3NIZ)
?
[Raw transfer]




3O0_B_5(3O0G)
CDK5_HUMAN
[Raw transfer]




GOL_A_4(3N9X)
?
[Raw transfer]




ADP_A_4(2B9H)
FUS3_YEAST
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




SU9_A_4(3PY0)
CDK2_HUMAN
[Raw transfer]




JWS_A_2(3PXY)
CDK2_HUMAN
[Raw transfer]




0SR_A_3(4F6U)
CDK8_HUMAN
[Raw transfer]




X01_A_3(3QL8)
CDK2_HUMAN
[Raw transfer]




JWS_A_4(3PXZ)
CDK2_HUMAN
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




Z3R_B_10(4AU8)
CDK5_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




X07_A_3(3QQF)
CDK2_HUMAN
[Raw transfer]




2AN_A_3(3PXQ)
CDK2_HUMAN
[Raw transfer]




2AN_A_5(3PY1)
CDK2_HUMAN
[Raw transfer]




1CK_A_2(4EK4)
CDK2_HUMAN
[Raw transfer]




2AN_A_7(3PXF)
CDK2_HUMAN
[Raw transfer]




2AN_A_4(3PY1)
CDK2_HUMAN
[Raw transfer]




2AN_A_2(3PXZ)
CDK2_HUMAN
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




EDO_A_2(3PY0)
CDK2_HUMAN
[Raw transfer]




IMD_B_11(4AU8)
CDK5_HUMAN
[Raw transfer]




EDO_A_2(3PY1)
CDK2_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




23 PsiBlast_CBE 93.69100%-116 - C1 -4AU8 4.9 CDK5_HUMAN
34 HHSearch 92.81100%-113 - C1 -4AU8 4.9 CDK5_HUMAN
21 PsiBlast_CBE 90.7899%-125 - C1 -3O0G 6.5 CDK5_HUMAN
20 PsiBlast_PDB 83.3459%-114 - C1 -3QQF 4.6 CDK2_HUMAN
19 PsiBlast_PDB 82.4159%-109 - C1 -3QL8 5.1 CDK2_HUMAN
15 PsiBlast_PDB 82.2059%-107 - C1 -3PXY 5.4 CDK2_HUMAN
17 PsiBlast_PDB 81.8159%-106 - C1 -3PY0 5.6 CDK2_HUMAN
12 PsiBlast_PDB 81.8159%-109 - C1 -3PXF 4.4 CDK2_HUMAN
16 PsiBlast_PDB 81.4259%-111 - C1 -3PXZ 5.4 CDK2_HUMAN
44 HHSearch 80.9159%-109 - C1 -3NIZ 4.3 ?
13 PsiBlast_PDB 80.7259%-104 - C1 -3PXQ 5.3 CDK2_HUMAN
18 PsiBlast_PDB 80.0559%-103 - C1 -3PY1 6.3 CDK2_HUMAN
57 HHSearch 72.0539%-107 - C1 -2B9H 5.2 FUS3_YEAST
41 HHSearch 71.9541%-100 - C1 -3N9X 2.7 ?
36 HHSearch 69.8046% -97 - C1 -1UA2 5.1 CDK7_HUMAN
50 HHSearch 67.5441%-105 - C1 -4BGQ 7.8 CDKL5_HUMAN
53 HHSearch 67.3242%-112 - C1 -4F6U 9.4 CDK8_HUMAN
52 HHSearch 62.1237%-104 - C1 -2FST 2.7 MK14_HUMAN
37 HHSearch 36.2460% 20 - C1 -4EK4 1.7 CDK2_HUMAN