@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDK8_H: (2014-08-15 )
MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0SR_A_3(4F6U)
CDK8_HUMAN
[Raw transfer]




0SV_A_3(4F7N)
CDK8_HUMAN
[Raw transfer]




0SS_A_3(4F6W)
CDK8_HUMAN
[Raw transfer]




0ST_A_3(4F70)
CDK8_HUMAN
[Raw transfer]




0SU_A_3(4F7J)
CDK8_HUMAN
[Raw transfer]




JWS_A_4(3PXZ)
CDK2_HUMAN
[Raw transfer]




0SO_A_3(4F7L)
CDK8_HUMAN
[Raw transfer]




SU9_A_3(3PY1)
CDK2_HUMAN
[Raw transfer]




FMT_A_8(4F6S)
CDK8_HUMAN
[Raw transfer]




X01_A_3(3QL8)
CDK2_HUMAN
[Raw transfer]




GOL_A_4(3N9X)
?
[Raw transfer]




SU9_A_4(3PY0)
CDK2_HUMAN
[Raw transfer]




0SW_A_3(4F7S)
CDK8_HUMAN
[Raw transfer]




JWS_A_2(3PXY)
CDK2_HUMAN
[Raw transfer]




X06_A_3(3QQG)
CDK2_HUMAN
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




2AN_A_5(3PXQ)
CDK2_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




2AN_A_3(3PXQ)
CDK2_HUMAN
[Raw transfer]




2AN_A_8(3PXF)
CDK2_HUMAN
[Raw transfer]




X07_A_3(3QQF)
CDK2_HUMAN
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




EDO_A_7(3RGF)
CDK8_HUMAN
[Raw transfer]




2AN_A_2(3PXZ)
CDK2_HUMAN
[Raw transfer]




2AN_A_4(3PY1)
CDK2_HUMAN
[Raw transfer]




DMS_A_4(4F6W)
CDK8_HUMAN
[Raw transfer]




EDO_A_2(3PY0)
CDK2_HUMAN
[Raw transfer]




2 PsiBlast_PDB 97.54100%-126 - C1 -4F6S 2.9 CDK8_HUMAN
8 PsiBlast_PDB 97.53100%-127 - C1 -4F7N 8.3 CDK8_HUMAN
4 PsiBlast_PDB 97.39100%-122 - C1 -4F6W 12.0 CDK8_HUMAN
9 PsiBlast_PDB 96.92100%-124 - C1 -4F7S 5.4 CDK8_HUMAN
3 PsiBlast_PDB 96.90100%-123 - C1 -4F6U 9.5 CDK8_HUMAN
5 PsiBlast_PDB 96.83100%-128 - C1 -4F70 7.2 CDK8_HUMAN
6 PsiBlast_PDB 95.27100%-126 - C1 -4F7J 7.4 CDK8_HUMAN
7 PsiBlast_PDB 94.83100%-124 - C1 -4F7L 8.6 CDK8_HUMAN
1 PsiBlast_PDB 93.63100%-132 - C1 -3RGF 2.9 CDK8_HUMAN
33 HHSearch 61.0635%-114 - C1 -3N9X 2.6 ?
19 PsiBlast_PDB 59.8838%-107 - C1 -3QQF 4.6 CDK2_HUMAN
11 PsiBlast_PDB 59.5138%-103 - C1 -3PXF 6.4 CDK2_HUMAN
20 PsiBlast_PDB 59.0138%-104 - C1 -3QQG 5.1 CDK2_HUMAN
14 PsiBlast_PDB 58.9138%-102 - C1 -3PXY 5.4 CDK2_HUMAN
16 PsiBlast_PDB 58.7238%-105 - C1 -3PY0 5.4 CDK2_HUMAN
15 PsiBlast_PDB 58.6538%-104 - C1 -3PXZ 5.4 CDK2_HUMAN
18 PsiBlast_PDB 58.3638%-105 - C1 -3QL8 4.9 CDK2_HUMAN
12 PsiBlast_PDB 56.8938% -99 - C1 -3PXQ 6.0 CDK2_HUMAN
17 PsiBlast_PDB 56.4038% -96 - C1 -3PY1 5.8 CDK2_HUMAN
49 HHSearch 53.1641%-113 - C1 -4AU8 4.2 CDK5_HUMAN
47 HHSearch 49.7835%-101 - C1 -3QYZ - MK01_RAT
46 HHSearch 46.4035%-117 - C1 -2FST 2.8 MK14_HUMAN