@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDK9_H: (2014-08-15 )
MAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3BLQ)
CDK9_HUMAN
[Raw transfer]




ATP_E_5(1UA2)
CDK7_HUMAN
[Raw transfer]




ADP_A_4(3NIZ)
?
[Raw transfer]




EZV_A_2(3EZV)
CDK2_HUMAN
[Raw transfer]




T3C_A_3(4BCG)
CDK9_HUMAN
[Raw transfer]




ANP_A_4(3MIA)
CDK9_HUMAN
[Raw transfer]




EZR_A_2(3EZR)
CDK2_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




F18_A_3(3TNH)
CDK9_HUMAN
[Raw transfer]




T9N_A_3(4BCJ)
CDK9_HUMAN
[Raw transfer]




SLQ_A_3(3LQ5)
CDK9_HUMAN
[Raw transfer]




T3E_A_3(4BCI)
CDK9_HUMAN
[Raw transfer]




CPB_A_6(3BLR)
CDK9_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




0SR_A_3(4F6U)
CDK8_HUMAN
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




RFZ_A_5(3MY1)
CDK9_HUMAN
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




13 PsiBlast_PDB 96.4999%-131 - C1 -4BCG 6.4 CDK9_HUMAN
4 PsiBlast_PDB 95.5299%-125 - C1 -3MIA 3.8 CDK9_HUMAN
5 PsiBlast_PDB 93.9299%-136 - C1 -3BLQ 4.0 CDK9_HUMAN
7 PsiBlast_PDB 92.6199%-123 - C1 -3MY1 4.9 CDK9_HUMAN
11 PsiBlast_PDB 92.5099%-127 - C1 -4BCI 5.8 CDK9_HUMAN
12 PsiBlast_PDB 91.8399%-126 - C1 -4BCJ 5.6 CDK9_HUMAN
6 PsiBlast_PDB 91.7499%-128 - C1 -3BLR 7.5 CDK9_HUMAN
8 PsiBlast_PDB 91.5499%-129 - C1 -3LQ5 6.9 CDK9_HUMAN
9 PsiBlast_PDB 91.4299%-136 - C1 -3TNH 4.4 CDK9_HUMAN
35 HHSearch 63.7931%-105 - C1 -3N9X 2.3 ?
15 PsiBlast_PDB 63.4740%-118 - C1 -3NIZ 4.2 ?
34 HHSearch 61.3641% -99 - C1 -1UA2 5.2 CDK7_HUMAN
40 HHSearch 58.9535%-117 - C1 -4F6U 9.1 CDK8_HUMAN
19 PsiBlast_PDB 58.7939%-105 - C1 -3EZR 6.3 CDK2_HUMAN
17 PsiBlast_PDB 58.3341%-106 - C1 -4AU8 4.9 CDK5_HUMAN
20 PsiBlast_PDB 58.0739%-101 - C1 -3EZV 7.0 CDK2_HUMAN
45 HHSearch 55.0636%-112 - C1 -4BGQ 7.5 CDKL5_HUMAN
46 HHSearch 49.8433%-109 - C1 -2FST 3.1 MK14_HUMAN