@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDKL3_: (2014-08-15 )
MEMYETLGKVGEGSYGTVMKCKHKNTGQIVAIKIFYERPEQSVNKIAMREIKFLKQFHHENLVNLIEVFRQKKKIHLVFEFIDHTVLDELQHYCHGLESKRLRKYLFQILRAIDYLHSNNIIHRDIKPENILVSQSGITKLCDFGFARTLAAPGDIYTDYVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGNPYLPSSSDLDLLHKIVLKVGNLSPHLQNIFSKSPIFAGVVLPQVQHPKNARKKYPKLNGLLADIVHACLQIDPADRISSSDLLHHEYFTRDGFIEKFMPELKAKLLQEAKVNSLIKPKESSKENELRKDERKTVYTNTLLSSSVLGKEIEKEKKPKEIKVRVIKVKGGRGDISEPKKKEYEGGLGQQDANENVHPMSPDTKLVTIEPPNPINPSTNCNGLKENPHCGGSVTMPPINLTNSNLMAANLSSNLFHPSVRLTERAKKRRTSSQSIGQVMPNSRQEDPGPIQSQMEKGIFNERTGHSDQMANENKRKLNFSRSDRKEFHFPELPVTIQSKDTKGMEVKQIKMLKRESKKTESSKIPTLLNVDQNQEKQEGGDGHCEGKNLKRNRFFFW

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]




38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




AGS_A_4(4KRC)
PHO85_YEAST
[Raw transfer]




ADP_A_4(3NIZ)
?
[Raw transfer]




ATP_A_5(4EOJ)
CDK2_HUMAN
[Raw transfer]




ANP_C_3(1J1B)
GSK3B_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




4SP_A_5(4EOK)
CDK2_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




1RO_A_5(4EOI)
CDK2_HUMAN
[Raw transfer]




DKI_A_2(4AAA)
CDKL2_HUMAN
[Raw transfer]




TC0_A_3(4BBM)
CDKL2_HUMAN
[Raw transfer]




HDT_A_2(1OIT)
CDK2_HUMAN
[Raw transfer]




DKI_A_2(4AAA)
CDKL2_HUMAN
[Raw transfer]




1RO_A_5(4EOL)
CDK2_HUMAN
[Raw transfer]




SAP_A_7(2PMI)
PHO85_YEAST
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




2AN_A_3(3PXQ)
CDK2_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




JWS_A_2(3PXY)
CDK2_HUMAN
[Raw transfer]




2AN_A_8(3PXF)
CDK2_HUMAN
[Raw transfer]




EDO_A_3(4AAA)
CDKL2_HUMAN
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




31 HHSearch 98.3099%-128 - C1 -3ZDU 8.5 CDKL3_HUMAN
30 HHSearch 84.3458%-129 - C1 -4AAA 6.9 CDKL2_HUMAN
3 PsiBlast_PDB 80.8257%-121 - C1 -4BBM 5.5 CDKL2_HUMAN
33 HHSearch 76.8742%-126 - C1 -4BGQ 8.2 CDKL5_HUMAN
32 HHSearch 75.2848%-117 - C1 -4AGU 8.4 CDKL1_HUMAN
36 HHSearch 66.4631%-107 - C1 -3N9X 2.4 ?
6 PsiBlast_PDB 66.1837%-115 - C1 -3NIZ 4.6 ?
50 HHSearch 65.8835%-111 * C1 *4AU8 4.6 CDK5_HUMAN
14 PsiBlast_PDB 63.2535%-113 - C1 -4EOK 6.2 CDK2_HUMAN
11 PsiBlast_PDB 62.8734%-115 - C1 -4KRC 6.0 PHO85_YEAST
15 PsiBlast_PDB 62.5835%-112 - C1 -4EOL 5.8 CDK2_HUMAN
16 PsiBlast_PDB 62.4535%-112 - C1 -4EOJ 3.7 CDK2_HUMAN
8 PsiBlast_PDB 61.5735%-111 - C1 -4EOI 5.9 CDK2_HUMAN
17 PsiBlast_PDB 60.4236%-111 - C1 -3PXF 6.4 CDK2_HUMAN
10 PsiBlast_PDB 59.3534%-114 - C1 -2PMI 5.2 PHO85_YEAST
20 PsiBlast_PDB 59.3036%-117 - C1 -3PXY 4.7 CDK2_HUMAN
43 HHSearch 57.7230%-108 - C1 -1J1B 4.3 GSK3B_HUMAN
18 PsiBlast_PDB 56.7536%-112 - C1 -3PXQ 5.1 CDK2_HUMAN
51 HHSearch 56.5435%-113 - C1 -2FST 4.3 MK14_HUMAN
13 PsiBlast_PDB 56.1436%-120 - C1 -1OIT 5.1 CDK2_HUMAN