@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_CDKL5_: (2014-08-15 )
MKIPNIGNVMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVATRWYRSPELLLGAPYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQTQRLLDRSPSRSAKRKPYHVESSTLSNRNQAGKSTALQSHHRSNSKDIQNLSVGLPRADEGLPANESFLNGNLAGASLSPLHTKTYQASSQPGSTSKDLTNNNIPHLLSPKEAKSKTEFDFNIDPKPSEGPGTKYLKSNSRSQQNRHSFMESSQSKAGTLQPNEKQSRHSYIDTIPQSSRSPSYRTKAKSHGALSDSKSVSNLSEARAQIAEPSTSRYFPSSCLDLNSPTSPTPTRHSDTRTLLSPSGRNNRNEGTLDSRRTTTRHSKTMEELKLPEHMDSSHSHSLSAPHESFSYGLGYTSPFSSQQRPHRHSMYVTRDKVRAKGLDGSLSIGQGMAARANSLQLLSPQPGEQLPPEMTVARSSVKETSREGTSSFHTRQKSEGGVYHDPHSDDGTAPKENRHLYNDPVPRRVGSFYRVPSPRPDNSFHENNVSTRVSSLPSESSSGTNHSKRQPAFDPWKSPENISHSEQLKEKEKQGFFRSMKKKKKKSQTVPNSDSPDLLTLQKSIHSASTPSSRPKEWRPEKISDLQTQSQPLKSLRKLLHLSSASNHPASSDPRFQPLTAQQTKNSFSEIRIHPLSQASGGSSNIRQEPAPKGRPALQLPDGGCDGRRQRHHSGPQDRRFMLRTTEQQGEYFCCGDPKKPHTPCVPNRALHRPISSPAPYPVLQVRGTSMCPTLQVRGTDAFSCPTQQSGFSFFVRHVMREALIHRAQVNQAALLTYHENAALTGK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]




ANP_A_5(4IC7)
MK07_HUMAN
[Raw transfer]




ANP_C_3(1J1B)
GSK3B_HUMAN
[Raw transfer]




ADP_A_4(2B9H)
FUS3_YEAST
[Raw transfer]




EZR_A_2(3EZR)
CDK2_HUMAN
[Raw transfer]




EZV_A_2(3EZV)
CDK2_HUMAN
[Raw transfer]




SU9_A_3(3PY1)
CDK2_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




SU9_A_4(3PY0)
CDK2_HUMAN
[Raw transfer]




TC0_A_3(4BBM)
CDKL2_HUMAN
[Raw transfer]




RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]




ALH_A_5(1UNG)
CDK5_HUMAN
[Raw transfer]




DKI_A_2(4AAA)
CDKL2_HUMAN
[Raw transfer]




JWS_A_2(3PXY)
CDK2_HUMAN
[Raw transfer]




DKI_A_2(4AAA)
CDKL2_HUMAN
[Raw transfer]




JWS_A_4(3PXZ)
CDK2_HUMAN
[Raw transfer]




DBQ_A_2(1Z57)
CLK1_HUMAN
[Raw transfer]




2AN_A_3(3PXQ)
CDK2_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




Z8B_A_2(3QYZ)
MK01_RAT
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




2AN_A_5(3PXQ)
CDK2_HUMAN
[Raw transfer]




EDO_A_3(4AAA)
CDKL2_HUMAN
[Raw transfer]




DMS_A_5(3QYZ)
MK01_RAT
[Raw transfer]




DMS_A_4(3QYZ)
MK01_RAT
[Raw transfer]




31 HHSearch 96.6199%-112 - C1 -4BGQ 8.2 CDKL5_HUMAN
32 HHSearch 78.0346% -98 - C1 -4AAA 6.7 CDKL2_HUMAN
3 PsiBlast_PDB 75.3647% -96 - C1 -4BBM 5.2 CDKL2_HUMAN
33 HHSearch 73.6846% -90 - C1 -4AGU 8.0 CDKL1_HUMAN
5 PsiBlast_PDB 72.3040% -88 - C1 -3ZDU 7.8 CDKL3_HUMAN
35 HHSearch 71.5733% -82 - C1 -3N9X 2.3 ?
49 HHSearch 69.4437% -93 - C1 -2B9H 4.9 FUS3_YEAST
10 PsiBlast_PDB 69.1740% -85 - C1 -1UNL 6.5 CDK5_HUMAN
43 HHSearch 68.9937% -84 - C1 -1J1B 4.5 GSK3B_HUMAN
51 HHSearch 68.2730% -87 - C1 -1Z57 4.2 CLK1_HUMAN
6 PsiBlast_PDB 67.2340% -88 - C1 -4AU8 5.2 CDK5_HUMAN
37 HHSearch 65.3836% -90 * C1 *4IC7 4.8 MK07_HUMAN
8 PsiBlast_PDB 65.2140% -88 - C1 -1UNG 4.9 CDK5_HUMAN
54 HHSearch 64.4935% -79 - C1 -3QYZ 5.0 MK01_RAT
17 PsiBlast_PDB 62.7238% -82 - C1 -3PXY 5.5 CDK2_HUMAN
15 PsiBlast_PDB 60.5438% -77 - C1 -3PXQ 5.6 CDK2_HUMAN
19 PsiBlast_PDB 60.4538% -79 - C1 -3PY0 5.6 CDK2_HUMAN
48 HHSearch 60.1834% -88 - C1 -2FST - MK14_HUMAN
14 PsiBlast_PDB 58.4638% -74 - C1 -3PXF - CDK2_HUMAN
13 PsiBlast_PDB 58.3338% -87 - C1 -3EZV 6.9 CDK2_HUMAN
20 PsiBlast_PDB 58.2738% -66 - C1 -3PY1 5.7 CDK2_HUMAN
12 PsiBlast_PDB 56.5938% -88 - C1 -3EZR 6.2 CDK2_HUMAN
18 PsiBlast_PDB 56.2938% -71 - C1 -3PXZ 5.4 CDK2_HUMAN