@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_KCC2D_: (2014-08-17 )
MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKLKGAILTTMLATRNFSAAKSLLKKPDGVKESTESSNTTIEDEDVKARKQEIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMDGSGMPKTMQSEETRVWHRRDGKWQNVHFHRSGSPTVPIKPPCIPNGKENFSGGTSLWQNI

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3LIJ)
?
[Raw transfer]




ANP_A_8(3Q5I)
?
[Raw transfer]




ANP_A_4(3HKO)
?
[Raw transfer]




DTQ_A_2(3NYV)
?
[Raw transfer]




DRK_A_2(3F3Z)
?
[Raw transfer]




3AM_A_2(3C0I)
CSKP_HUMAN
[Raw transfer]




MES_A_2(2Y0A)
DAPK1_HUMAN
[Raw transfer]




BK3_A_6(3MWU)
?
[Raw transfer]




CHAIN_H_8(3KL8)
KCC2D_CAEEL
[Raw transfer]

-

DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]




DB8_A_2(3SOA)
KCC2A_HUMAN
[Raw transfer]




PGO_B_7(2VZ6)
KCC2A_HUMAN
[Raw transfer]




CHAIN_F_6(3KL8)
KCC2D_CAEEL
[Raw transfer]

-

63 HHSearch 92.3288% -95 - C1 -3SOA 4.7 KCC2A_HUMAN
23 PsiBlast_CBE 73.9092%-111 - C1 -2VZ6 3.4 KCC2A_HUMAN
25 PsiBlast_CBE 67.8983%-124 - C1 -3KL8 7.6 KCC2D_CAEEL
24 PsiBlast_CBE 66.7783%-120 - C1 -3KL8 6.8 KCC2D_CAEEL
66 HHSearch 62.4149%-100 - C1 -3C0I 5.0 CSKP_HUMAN
69 HHSearch 57.8040%-110 - C1 -3LIJ 3.7 ?
72 HHSearch 56.4835%-104 - C1 -2Y0A 2.9 DAPK1_HUMAN
77 HHSearch 56.1134%-107 - C1 -3HKO 4.4 ?
83 HHSearch 55.5437%-115 * C1 *3F3Z 5.7 ?
70 HHSearch 54.2540% -95 - C1 -3MWU 3.5 ?
76 HHSearch 53.1535%-109 - C1 -3Q5I 4.3 ?
71 HHSearch 52.8641% -98 - C1 -3NYV 5.0 ?
75 HHSearch 52.8444%-103 - C1 -2W4O 5.4 KCC4_HUMAN