@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_KCC2G_: (2014-08-17 )
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLVSRNFSAAKSLLNKKSDGGVKKRKSSSSVHLMPQSNNKNSLVSPAQEPAPLQTAMEPQTTVVHNATDGIKGSTESCNTTTEDEDLKARSPEGRSSRDRTAPSAGMQPQPSLCSSAMRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCSGAPAAPLQ

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_A_7(2VN9)
KCC2D_HUMAN
[Raw transfer]




5CP_B_6(3BHH)
KCC2B_HUMAN
[Raw transfer]




GVD_B_8(2VN9)
KCC2D_HUMAN
[Raw transfer]




ANP_A_2(3MFU)
CSKP_HUMAN
[Raw transfer]




5CP_A_5(3BHH)
KCC2B_HUMAN
[Raw transfer]




ANP_A_2(3MFS)
CSKP_HUMAN
[Raw transfer]




ANP_A_5(3IGO)
?
[Raw transfer]




K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]




3AM_A_3(3C0G)
CSKP_HUMAN
[Raw transfer]




3AM_A_2(3C0I)
CSKP_HUMAN
[Raw transfer]




AMP_A_3(3C0H)
CSKP_HUMAN
[Raw transfer]




ANP_A_2(3MFR)
CSKP_HUMAN
[Raw transfer]




BK3_A_6(3MWU)
?
[Raw transfer]




DRN_A_2(2V7O)
KCC2G_HUMAN
[Raw transfer]




DB8_A_2(3SOA)
KCC2A_HUMAN
[Raw transfer]




EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]




4 PsiBlast_PDB 76.5392%-113 - C1 -2VN9 7.1 KCC2D_HUMAN
2 PsiBlast_PDB 75.8289%-121 - C1 -2WEL 6.0 KCC2D_HUMAN
1 PsiBlast_PDB 75.5899%-110 - C1 -2V7O 6.7 KCC2G_HUMAN
21 PsiBlast_CBE 74.9192%-112 - C1 -2VN9 7.0 KCC2D_HUMAN
5 PsiBlast_PDB 74.3791%-112 - C1 -3BHH 6.1 KCC2B_HUMAN
22 PsiBlast_CBE 73.6191%-112 - C1 -3BHH 6.4 KCC2B_HUMAN
3 PsiBlast_PDB 69.7286% -96 - C1 -3SOA 4.7 KCC2A_HUMAN
13 PsiBlast_PDB 63.0347%-102 - C1 -3MFU 4.5 CSKP_HUMAN
11 PsiBlast_PDB 62.7247%-103 - C1 -3MFS 5.1 CSKP_HUMAN
10 PsiBlast_PDB 62.6547%-101 - C1 -3MFR 4.0 CSKP_HUMAN
17 PsiBlast_PDB 62.5946%-104 - C1 -3C0H 4.2 CSKP_HUMAN
16 PsiBlast_PDB 62.1346%-101 - C1 -3C0G 4.0 CSKP_HUMAN
18 PsiBlast_PDB 61.1746%-103 - C1 -3C0I 5.0 CSKP_HUMAN
20 PsiBlast_PDB 54.2139% -97 - C1 -3MWU 3.5 ?
19 PsiBlast_PDB 54.1139% -99 - C1 -3IGO 5.6 ?