@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_KCC4_H: (2014-08-17 )
MLKVTVPSCSASSCSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSASSSHGSIQESHKASRDPSPIQDGNEDMKAIPEGEKIQGDGAQAAVKGAQAELMKVQALEKVKGADINAEEAPKMVPKAVEDGIKVADLELEEGLAEEKLKTVEEAAAPREGQGSSAVGFEVPQQDVILPEY

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4FG9)
KCC1A_HUMAN
[Raw transfer]




ATP_A_3(4FG8)
KCC1A_HUMAN
[Raw transfer]




ATP_A_2(4FG7)
KCC1A_HUMAN
[Raw transfer]




ANP_A_8(3Q5I)
?
[Raw transfer]




GVD_A_7(2VN9)
KCC2D_HUMAN
[Raw transfer]




K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]




DRK_A_2(3F3Z)
?
[Raw transfer]




ANP_A_7(3LIJ)
?
[Raw transfer]




5CP_A_5(3BHH)
KCC2B_HUMAN
[Raw transfer]




DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]




DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]




DTQ_A_2(3NYV)
?
[Raw transfer]




BK3_A_6(3MWU)
?
[Raw transfer]




BK3_A_6(3MWU)
?
[Raw transfer]




J60_A_6(2JAM)
KCC1G_HUMAN
[Raw transfer]




J60_A_6(2JAM)
KCC1G_HUMAN
[Raw transfer]




MES_A_2(2Y0A)
DAPK1_HUMAN
[Raw transfer]




DRN_A_2(2V7O)
KCC2G_HUMAN
[Raw transfer]




EDO_A_5(2JAM)
KCC1G_HUMAN
[Raw transfer]




DB8_A_2(3SOA)
KCC2A_HUMAN
[Raw transfer]




DB8_A_2(3SOA)
KCC2A_HUMAN
[Raw transfer]




EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]




EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]




31 HHSearch 88.86100%-108 - C1 -2W4O 5.5 KCC4_HUMAN
12 PsiBlast_PDB 75.3042%-106 - C1 -2V7O 6.0 KCC2G_HUMAN
9 PsiBlast_PDB 69.6043%-110 - C1 -2WEL 5.4 KCC2D_HUMAN
39 HHSearch 69.4139%-108 - C1 -2Y0A 2.4 DAPK1_HUMAN
11 PsiBlast_PDB 69.1344%-101 - C1 -2VN9 6.2 KCC2D_HUMAN
36 HHSearch 68.9943% -96 - C1 -3SOA 3.8 KCC2A_HUMAN
42 HHSearch 66.4940% -98 - C1 -3NYV 5.4 ?
6 PsiBlast_PDB 64.7147%-112 - C1 -4FG8 6.0 KCC1A_HUMAN
4 PsiBlast_PDB 64.4647%-103 - C1 -4FG9 5.9 KCC1A_HUMAN
15 PsiBlast_PDB 64.1942%-107 - C1 -3BHH 4.4 KCC2B_HUMAN
19 PsiBlast_PDB 63.8342%-118 - C1 -3LIJ 3.8 ?
20 PsiBlast_PDB 61.9743%-118 - C1 -3F3Z 5.7 ?
7 PsiBlast_PDB 61.2850%-123 - C1 -4FG7 4.5 KCC1A_HUMAN
40 HHSearch 59.8646%-104 - C1 -2JAM 6.1 KCC1G_HUMAN
43 HHSearch 57.9636%-101 - C1 -3Q5I 4.2 ?
41 HHSearch 55.3440% -98 - C1 -3MWU 6.0 ?