@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_NEK1_H: (2014-08-18 )
MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKITKPAAKYGIPLAYKKYGDKKLHEKKPLQKHKQAHQTPEKRVNTGEERRKISEEAARKRRLEFIEKEKKQKDQIISLMKAEQMKRQEKERLERINRAREQGWRNVLSAGGSGEVKAPFLGSGGTIAPSSFSSRGQYEHYHAIFDQMQQQRAEDNEAKWKREIYGRGLPERGILPGVRPGFPYGAAGHHHFPDADDIRKTLKRLKAVSKQANANRQKGQLAVERAKQVEEFLQRKREAMQNKARAEGHMVYLARLRQIRLQNFNERQQIKAKLRGEKKEANHSEGQEGSEEADMRRKKIESLKAHANARAAVLKEQLERKRKEAYEREKKVWEEHLVAKGVKSSDVSPPLGQHETGGSPSKQQMRSVISVTSALKEVGVDSSLTDTRETSEEMQKTNNAISSKREILRRLNENLKAQEDEKGKQNLSDTFEINVHEDAKEHEKEKSVSSDRKKWEAGGQLVIPLDELTLDTSFSTTERHTVGEVIKLGPNGSPRRAWGKSPTDSVLKILGEAELQLQTELLENTTIRSEISPEGEKYKPLITGEKKVQCISHEINPSAIVDSPVETKSPEFSEASPQMSLKLEGNLEEPDDLETEILQEPSGTNKDESLPCTITDVWISEEKETKETQSADRITIQENEVSEDGVSSTVDQLSDIHIEPGTNDSQHSKCDVDKSVQPEPFFHKVVHSEHLNLV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




21 PsiBlast_CBE 93.8199%-111 - C1 -4B9D 5.6 NEK1_HUMAN
32 HHSearch 92.67100%-112 - C1 -4B9D 5.1 NEK1_HUMAN
33 HHSearch 61.0043% -95 - C1 -2W5A 6.0 NEK2_HUMAN
18 PsiBlast_PDB 60.4742%-102 - C1 -2JAV 6.6 NEK2_HUMAN
11 PsiBlast_PDB 58.0242% -99 - C1 -2XKD 6.8 NEK2_HUMAN
12 PsiBlast_PDB 57.6542% -97 - C1 -2XKF 6.2 NEK2_HUMAN
19 PsiBlast_PDB 57.5942% -94 - C1 -2W5B 5.6 NEK2_HUMAN
14 PsiBlast_PDB 57.5442% -96 - C1 -2XNM 7.7 NEK2_HUMAN
16 PsiBlast_PDB 56.3542% -93 - C1 -2XNO 5.8 NEK2_HUMAN
7 PsiBlast_PDB 55.9042% -94 - C1 -2XK6 6.2 NEK2_HUMAN
13 PsiBlast_PDB 55.7142%-102 - C1 -2XKE 6.1 NEK2_HUMAN
6 PsiBlast_PDB 53.7342% -94 - C1 -2XK4 7.2 NEK2_HUMAN
17 PsiBlast_PDB 53.3142% -91 - C1 -2XNP 9.2 NEK2_HUMAN
4 PsiBlast_PDB 53.2842% -97 - C1 -2WQO 7.3 NEK2_HUMAN
8 PsiBlast_PDB 52.5642% -94 - C1 -2XK7 6.1 NEK2_HUMAN
5 PsiBlast_PDB 52.4942% -93 - C1 -2XK3 5.9 NEK2_HUMAN
15 PsiBlast_PDB 50.9642% -90 - C1 -2XNN 6.2 NEK2_HUMAN
9 PsiBlast_PDB 50.9342% -96 - C1 -2XK8 7.1 NEK2_HUMAN
10 PsiBlast_PDB 48.5142% -91 - C1 -2XKC 6.7 NEK2_HUMAN
39 HHSearch 48.3831% -85 - C1 -4GV1 5.9 AKT1_HUMAN
43 HHSearch 38.4230% -86 - C1 -1ZY4 2.6 GCN2_YEAST