@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_NEK5_H: (2014-08-18 )
MDKYDVIKAIGQGAFGKAYLAKGKSDSKHCVIKEINFEKMPIQEKEASKKEVILLEKMKHPNIVAFFNSFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILGWFVQISLGLKHIHDRKILHRDIKAQNIFLSKNGMVAKLGDFGIARVLNNSMELARTCIGTPYYLSPEICQNKPYNNKTDIWSLGCVLYELCTLKHPFEGNNLQQLVLKICQAHFAPISPGFSRELHSLISQLFQVSPRDRPSINSILKRPFLENLIPKYLTPEVIQEEFSHMLICRAGAPASRHAGKVVQKCKIQKVRFQGKCPPRSRISVPIKRNAILHRNEWRPPAGAQKARSIKMIERPKIAAVCGHYDYYYAQLDMLRRRAHKPSYHPIPQENTGVEDYGQETRHGPSPSQWPAEYLQRKFEAQQYKLKVEKQLGLRPSSAEPNYNQRQELRSNGEEPRFQELPFRKNEMKEQEYWKQLEEIRQQYHNDMKEIRKKMGREPEENSKISHKTYLVKKSNLPVHQDASEGEAPVQMEFRSCCPGWSAMARSWLTATSASQDIEKDLKQMRLQNTKESKNPEQKYKAKKGVKFEINLDKCISDENILQEEEAMDIPNETLTFEDGMKFKEYECVKEHGDYTDKAFEKLHCPEAGFSTQTVAAVGNRRQWDGGAPQTLLQMMAVADITSTCPTGPDSESVLSVSRQEGKTKDPYSPVLILM

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




07U_A_2(3TXO)

[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




2 PsiBlast_PDB 89.1862%-117 - C1 -4B9D 5.1 NEK1_HUMAN
32 HHSearch 77.4242%-110 - C1 -2W5A 6.0 NEK2_HUMAN
14 PsiBlast_PDB 73.1241%-111 - C1 -2XNM 7.7 NEK2_HUMAN
18 PsiBlast_PDB 72.6741%-119 - C1 -2JAV 6.6 NEK2_HUMAN
12 PsiBlast_PDB 72.0641%-113 - C1 -2XKF 6.1 NEK2_HUMAN
11 PsiBlast_PDB 71.9341%-114 - C1 -2XKD 6.5 NEK2_HUMAN
19 PsiBlast_PDB 71.8941%-107 - C1 -2W5B 5.7 NEK2_HUMAN
13 PsiBlast_PDB 71.3541%-116 - C1 -2XKE 5.9 NEK2_HUMAN
16 PsiBlast_PDB 70.1841%-108 - C1 -2XNO 5.8 NEK2_HUMAN
8 PsiBlast_PDB 70.1641%-110 - C1 -2XK7 6.4 NEK2_HUMAN
17 PsiBlast_PDB 69.4241%-106 - C1 -2XNP 9.2 NEK2_HUMAN
15 PsiBlast_PDB 69.2841%-104 - C1 -2XNN 6.1 NEK2_HUMAN
9 PsiBlast_PDB 69.1341%-111 - C1 -2XK8 7.0 NEK2_HUMAN
4 PsiBlast_PDB 68.2941%-110 - C1 -2WQO 7.1 NEK2_HUMAN
5 PsiBlast_PDB 68.2441%-106 - C1 -2XK3 5.7 NEK2_HUMAN
6 PsiBlast_PDB 68.1641%-107 - C1 -2XK4 7.2 NEK2_HUMAN
7 PsiBlast_PDB 67.7841%-108 - C1 -2XK6 5.9 NEK2_HUMAN
10 PsiBlast_PDB 66.7341%-104 - C1 -2XKC 6.7 NEK2_HUMAN
41 HHSearch 62.3331% -96 - C1 -4GV1 5.9 AKT1_HUMAN
38 HHSearch 55.1530% -84 - C1 -3TXO 4.7
39 HHSearch 53.1431%-100 - C1 -1ZY4 2.6 GCN2_YEAST