@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_PAK2_H: (2014-08-19 )
MSDNGELEDKPPAPPVRMSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRHKIISIFSGTEKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSNTVKQKYLSFTPPEKDGFPSGTPALNAKGTEAPAVVTEEEDDDEETAPPVIAPRPDHTKSIYTRSVIDPVPAPVGDSHVDGAAKSLDKQKKKTKMTDEEIMEKLRTIVSIGDPKKKYTRYEKIGQGASGTVFTATDVALGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSYLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMEGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKPLSSLTPLIMAAKEAMKSNR

Atome Classification :

(19 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(2YEX)
CHK1_HUMAN
[Raw transfer]



X4Z_A_3(4O0R)
?
[Raw transfer]



ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4JDI)
?
[Raw transfer]



ANP_A_3(4FIG)
?
[Raw transfer]



ANP_A_3(4FIE)
PAK4_HUMAN
[Raw transfer]



X4Z_A_3(4KS7)

[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



ATP_A_2(3Q53)
PAK1_HUMAN
[Raw transfer]



2OL_A_3(4O0T)
?
[Raw transfer]



ANP_A_4(3HKO)
?
[Raw transfer]



ANP_A_4(3Q4Z)
PAK1_HUMAN
[Raw transfer]



23D_A_2(2CDZ)
PAK4_HUMAN
[Raw transfer]



STU_B_2(1BYG)
CSK_HUMAN
[Raw transfer]



YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]



DW1_A_2(3FY0)
PAK1_HUMAN
[Raw transfer]



XR1_A_2(4EQC)
PAK1_HUMAN
[Raw transfer]



ADE_A_2(3A7I)
STK24_HUMAN
[Raw transfer]



EDO_A_5(2J0I)
PAK4_HUMAN
[Raw transfer]



EDO_A_4(2J0I)
PAK4_HUMAN
[Raw transfer]



CHAIN_B_2(2Q0N)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_B_2(4JDI)
?
[Raw transfer]
-
CHAIN_B_2(4FII)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FIF)
PAK4_HUMAN
[Raw transfer]
-
EDO_A_10(2Q0N)
PAK4_HUMAN
[Raw transfer]
2 PsiBlast_PDB 91.0890%-109 - C1 -3Q53 3.9 PAK1_HUMAN
33 HHSearch 90.5791%-113 - C1 -3FXZ 7.1 ?
10 PsiBlast_PDB 89.4490%-113 - C1 -4O0R 6.8 ?
3 PsiBlast_PDB 89.2090%-120 - C1 -3Q4Z 5.8 PAK1_HUMAN
9 PsiBlast_PDB 88.7690%-113 - C1 -4EQC 8.6 PAK1_HUMAN
11 PsiBlast_PDB 88.5690%-110 - C1 -4O0T 8.6 ?
7 PsiBlast_PDB 87.9990%-112 - C1 -3FY0 5.0 PAK1_HUMAN
32 HHSearch 78.9545%-101 - C1 -4FIE 5.8 PAK4_HUMAN
15 PsiBlast_PDB 77.3351%-107 - C1 -2CDZ 6.6 PAK4_HUMAN
14 PsiBlast_PDB 75.1751%-102 - C1 -2Q0N 9.0 PAK4_HUMAN
34 HHSearch 75.1352%-103 - C1 -4JDI 7.3 ?
16 PsiBlast_PDB 75.0651%-104 - C1 -2J0I 3.6 PAK4_HUMAN
20 PsiBlast_PDB 74.6251%-103 - C1 -4FII 5.0 PAK4_HUMAN
17 PsiBlast_PDB 73.4051% -97 - C1 -4FIF 5.8 PAK4_HUMAN
18 PsiBlast_PDB 73.2251%-104 - C1 -4FIG 6.5 ?
35 HHSearch 72.4050%-109 * C1 *4KS7 7.5
46 HHSearch 64.2745% -99 - C1 -3A7I 4.2 STK24_HUMAN
43 HHSearch 49.8935% -98 - C1 -3HKO 5.3 ?
47 HHSearch 41.2131% -98 - C1 -2W5A - NEK2_HUMAN