@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_PAK3_H: (2014-08-19 )
MSDGLDNEEKPPAPPLRMNSNNRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGGGDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSFTSGDKSAHGYIAAHPSSTKTASEPPLAPPVSEEEDEEEEEEEDENEPPPVIAPRPEHTKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPLSSLTPLIIAAKEAIKNSSR

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(2YEX)
CHK1_HUMAN
[Raw transfer]



ANP_A_3(4JDI)
?
[Raw transfer]



ANP_A_3(4JDI)
?
[Raw transfer]



X4Z_A_3(4O0R)
?
[Raw transfer]



ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4FIE)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4FIG)
?
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



X4Z_A_3(4KS7)

[Raw transfer]



ATP_A_2(3Q53)
PAK1_HUMAN
[Raw transfer]



2OL_A_3(4O0T)
?
[Raw transfer]



STU_B_2(1BYG)
CSK_HUMAN
[Raw transfer]



YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]



GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]



ANP_A_4(3Q4Z)
PAK1_HUMAN
[Raw transfer]



DW1_A_2(3FY0)
PAK1_HUMAN
[Raw transfer]



ANP_A_4(3HKO)
?
[Raw transfer]



XR1_A_2(4EQC)
PAK1_HUMAN
[Raw transfer]



ADE_A_2(3A7I)
STK24_HUMAN
[Raw transfer]



EDO_A_9(2Q0N)
PAK4_HUMAN
[Raw transfer]



EDO_A_4(2Q0N)
PAK4_HUMAN
[Raw transfer]



EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]



CHAIN_B_2(2Q0N)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_B_2(4JDI)
?
[Raw transfer]
-
CHAIN_B_2(4JDI)
?
[Raw transfer]
-
CHAIN_B_2(4JDH)
?
[Raw transfer]
-
CHAIN_B_2(4FII)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FIF)
PAK4_HUMAN
[Raw transfer]
-
EDO_A_10(2Q0N)
PAK4_HUMAN
[Raw transfer]
34 HHSearch 90.2995%-110 - C1 -3FXZ 7.2 ?
2 PsiBlast_PDB 89.9994%-106 - C1 -3Q53 3.9 PAK1_HUMAN
8 PsiBlast_PDB 88.8194%-109 - C1 -4EQC 8.5 PAK1_HUMAN
10 PsiBlast_PDB 88.4894%-109 - C1 -4O0R 6.8 ?
11 PsiBlast_PDB 87.3294%-106 - C1 -4O0T 8.5 ?
6 PsiBlast_PDB 87.1894%-107 - C1 -3FY0 5.3 PAK1_HUMAN
9 PsiBlast_PDB 87.1693%-115 - C1 -3Q4Z 5.8 PAK1_HUMAN
33 HHSearch 80.2045% -98 - C1 -4FIE 5.8 PAK4_HUMAN
35 HHSearch 77.0152%-100 - C1 -4JDI 7.3 ?
18 PsiBlast_PDB 75.1652%-101 - C1 -4JDH 7.8 ?
20 PsiBlast_PDB 75.0652%-102 - C1 -2Q0N 8.3 PAK4_HUMAN
16 PsiBlast_PDB 74.6952%-103 - C1 -4FII 5.0 PAK4_HUMAN
14 PsiBlast_PDB 72.9552%-104 - C1 -4FIG 6.5 ?
13 PsiBlast_PDB 72.7652% -97 - C1 -4FIF 5.8 PAK4_HUMAN
36 HHSearch 72.3650%-104 * C1 *4KS7 7.4
44 HHSearch 63.2046% -95 - C1 -3A7I 4.2 STK24_HUMAN
45 HHSearch 46.8735% -95 - C1 -3HKO 5.4 ?
47 HHSearch 40.0131% -95 - C1 -2W5A 3.3 NEK2_HUMAN