@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_PAK4_H: (2014-08-19 )
MFGKRKKRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEESARRPKPLVDPACITSIQPGAPKTIVRGSKGAKDGALTLLLDEFENMSVTRSNSLRRDSPPPPARARQENGMPEEPPGPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_4(2YEX)
CHK1_HUMAN
[Raw transfer]



ANP_B_6(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4JDI)
?
[Raw transfer]



ANP_A_3(4FIG)
?
[Raw transfer]



ANP_A_3(4FIE)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4FIE)
PAK4_HUMAN
[Raw transfer]



ANP_B_6(4FIG)
?
[Raw transfer]



ANP_B_4(4FIE)
PAK4_HUMAN
[Raw transfer]



X4Z_A_3(4KS7)

[Raw transfer]



2OO_A_2(4O0Y)
?
[Raw transfer]



ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



2OL_A_2(4O0V)
?
[Raw transfer]



X4Z_A_3(4KS7)

[Raw transfer]



2OQ_A_2(4O0X)
?
[Raw transfer]



23D_A_2(2CDZ)
PAK4_HUMAN
[Raw transfer]



23D_B_5(2F57)

[Raw transfer]



B49_A_2(4KS8)

[Raw transfer]



YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



ADE_A_2(3A7I)
STK24_HUMAN
[Raw transfer]



EDO_A_5(2J0I)
PAK4_HUMAN
[Raw transfer]



EDO_A_9(2Q0N)
PAK4_HUMAN
[Raw transfer]



TRS_A_4(2F57)
PAK7_HUMAN
[Raw transfer]



CHAIN_B_2(4JDH)
?
[Raw transfer]
-
CHAIN_B_2(4JDI)
?
[Raw transfer]
-
CHAIN_B_2(4JDJ)
?
[Raw transfer]
-
CHAIN_B_2(4JDK)
?
[Raw transfer]
-
EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]



CHAIN_C_3(4FIF)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_B_2(4FII)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_B_2(2Q0N)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_D_4(4FIF)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_B_2(4L67)
?
[Raw transfer]
-
EDO_A_10(2Q0N)
PAK4_HUMAN
[Raw transfer]
39 HHSearch 92.53100%-123 - C1 -4FIE 5.7 PAK4_HUMAN
12 PsiBlast_PDB 82.3499%-132 - C1 -2J0I 3.5 PAK4_HUMAN
13 PsiBlast_PDB 81.8699%-128 - C1 -2Q0N 10.8 PAK4_HUMAN
10 PsiBlast_PDB 80.8998%-129 - C1 -4JDK 5.2 ?
11 PsiBlast_PDB 80.8199%-131 - C1 -2CDZ 6.5 PAK4_HUMAN
7 PsiBlast_PDB 80.5699%-127 - C1 -4JDH 9.4 ?
17 PsiBlast_PDB 80.5599%-128 - C1 -4O0X 9.3 ?
9 PsiBlast_PDB 80.4498%-129 - C1 -4JDJ 5.5 ?
5 PsiBlast_PDB 80.0899%-127 - C1 -4FII 5.3 PAK4_HUMAN
16 PsiBlast_PDB 79.9899%-128 - C1 -4O0V 8.5 ?
40 HHSearch 79.82100%-127 - C1 -4JDI 7.5 ?
3 PsiBlast_PDB 79.7699%-128 - C1 -4FIG 6.5 ?
2 PsiBlast_PDB 78.9099%-125 - C1 -4FIF 5.9 PAK4_HUMAN
18 PsiBlast_PDB 77.7499%-125 - C1 -4O0Y 8.0 ?
20 PsiBlast_PDB 74.3699%-126 - C1 -4L67 5.2 ?
42 HHSearch 74.3175%-128 - C1 -4KS7 7.2
21 PsiBlast_CBE 73.0099%-103 - C1 -4FIE 5.6 PAK4_HUMAN
41 HHSearch 67.7752%-129 - C1 -3FXZ 7.0 ?
25 PsiBlast_CBE 62.1784%-112 - C1 -2F57 4.0 PAK7_HUMAN
23 PsiBlast_CBE 60.6199%-104 - C1 -4FIF 6.0 PAK4_HUMAN
22 PsiBlast_CBE 58.4299%-101 - C1 -4FIG 5.9 ?
24 PsiBlast_CBE 58.4084%-104 - C1 -2F57 5.5
57 HHSearch 56.2138%-113 * C1 *3A7I 4.2 STK24_HUMAN
27 PsiBlast_CBE 54.9975%-104 - C1 -4KS8 6.3
48 HHSearch 41.3530%-127 - C1 -2W5A 3.3 NEK2_HUMAN