@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_PAK6_H: (2014-08-19 )
MFRKKKKKRPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDTLRRPKPVVDPSRITRVQLQPMKTVVRGSAMPVDGYISGLLNDIQKLSVISSNTLRGRSPTSRRRAQSLGLLGDEHWATDPDMYLQSPQSERTDPHGLYLSCNGGTPAGHKQMPWPEPQSPRVLPNGLAAKAQSLGPAEFQGASQRCLQLGACLQSSPPGASPPTGTNRHGMKAAKHGSEEARPQSCLVGSATGRPGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKPGPPPQSKPNSSFRPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSSPQKSLRTAPATGQLPGRSSPAGSPRTWHAQISTSNLYLPQDPTVAKGALAGEDTGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTGLPECLVPLIQLYRKQTSTC

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

X4Z_A_4(2X4Z)

[Raw transfer]



X4Z_A_3(4KS7)

[Raw transfer]



X4Z_A_3(4KS7)

[Raw transfer]



ANP_B_4(4FIE)
PAK4_HUMAN
[Raw transfer]



N53_A_2(4APP)

[Raw transfer]



ANP_B_6(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_5(4FIF)
PAK4_HUMAN
[Raw transfer]



ANP_A_3(4FIE)
PAK4_HUMAN
[Raw transfer]



2OO_A_2(4O0Y)
?
[Raw transfer]



GOL_A_3(2X4Z)

[Raw transfer]



ANP_A_3(4FIG)
?
[Raw transfer]



GOL_A_3(4APP)

[Raw transfer]



ANP_B_6(4FIG)
?
[Raw transfer]



ANP_A_3(4JDI)
?
[Raw transfer]



2OL_A_2(4O0V)
?
[Raw transfer]



GOL_A_2(2X4Z)

[Raw transfer]



2OQ_A_2(4O0X)
?
[Raw transfer]



B49_A_2(4KS8)

[Raw transfer]



23D_A_2(2CDZ)
PAK4_HUMAN
[Raw transfer]



23D_B_5(2F57)

[Raw transfer]



YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



EDO_A_5(2J0I)
PAK4_HUMAN
[Raw transfer]



EDO_A_4(2J0I)
PAK4_HUMAN
[Raw transfer]



TRS_A_4(2F57)
PAK7_HUMAN
[Raw transfer]



CHAIN_B_2(4L67)
?
[Raw transfer]
-
CHAIN_B_2(4JDI)
?
[Raw transfer]
-
CHAIN_B_2(4JDH)
?
[Raw transfer]
-
CHAIN_B_2(2Q0N)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_B_2(4FII)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FIF)
PAK4_HUMAN
[Raw transfer]
-
CHAIN_D_4(4FIF)
PAK4_HUMAN
[Raw transfer]
-
EDO_A_10(2Q0N)
PAK4_HUMAN
[Raw transfer]
37 HHSearch 91.27100%-126 - C1 -4KS7 7.3
5 PsiBlast_PDB 90.5775%-120 - C1 -4FIE 5.6 PAK4_HUMAN
3 PsiBlast_PDB 87.7499%-126 - C1 -4KS8 6.3
4 PsiBlast_PDB 86.4375%-128 - C1 -2F57 4.0 PAK7_HUMAN
13 PsiBlast_PDB 86.0875%-125 - C1 -2CDZ 6.6 PAK4_HUMAN
19 PsiBlast_PDB 84.8274%-122 - C1 -2X4Z 7.7
9 PsiBlast_PDB 84.6475%-118 - C1 -4FII 5.2 PAK4_HUMAN
7 PsiBlast_PDB 84.5575%-121 - C1 -4FIG 6.6 ?
15 PsiBlast_PDB 83.6375%-121 - C1 -2Q0N 10.7 PAK4_HUMAN
14 PsiBlast_PDB 83.1975%-122 - C1 -2J0I 3.5 PAK4_HUMAN
17 PsiBlast_PDB 83.0275%-120 - C1 -4O0X 9.3 ?
11 PsiBlast_PDB 82.4775%-119 - C1 -4JDH 9.2 ?
18 PsiBlast_PDB 82.2975%-118 - C1 -4O0Y 8.1 ?
12 PsiBlast_PDB 81.6175%-118 - C1 -4JDI 7.5 ?
6 PsiBlast_PDB 81.2275%-115 - C1 -4FIF 5.9 PAK4_HUMAN
20 PsiBlast_PDB 80.2274%-119 - C1 -4APP 7.9
16 PsiBlast_PDB 79.7275%-118 - C1 -4O0V 8.5 ?
38 HHSearch 74.4448%-123 - C1 -3FXZ 7.0 ?
22 PsiBlast_CBE 68.6375% -96 - C1 -4FIE 5.6 PAK4_HUMAN
21 PsiBlast_CBE 61.7175% -95 - C1 -2F57 6.1
24 PsiBlast_CBE 60.2075% -95 - C1 -4FIF 6.0 PAK4_HUMAN
23 PsiBlast_CBE 58.2575% -92 - C1 -4FIG 5.9 ?
25 PsiBlast_CBE 53.6775% -91 - C1 -4L67 2.7 ?
42 HHSearch 45.4130%-117 - C1 -2W5A - NEK2_HUMAN