@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_VRK2_H: (2014-08-20 )
MPPKRNEKYKLPIPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLGPLDFSTKGQSINVHTPNSQKVDSQKAATKQVNKAHNRLIEKKVHSERSAESCATWKVQKEEKLIGLMNNEAAQESTRRRQKYQESQEPLNEVNSFPQKISYTQFPNSFYEPHQDFTSPDIFKKSRSPSWYKYTSTVSTGITDLESSTGLWPTISQFTLSEETNADVYYYRIIIPVLLMLVFLALFFL

Atome Classification :

(7 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1QN_A_5(4KB8)
KC1D_HUMAN
[Raw transfer]




1QN_A_5(4KB8)
KC1D_HUMAN
[Raw transfer]




0CK_A_5(3UYT)
KC1D_HUMAN
[Raw transfer]




REB_A_5(3OP5)
VRK1_HUMAN
[Raw transfer]




1QG_A_5(4KBK)
KC1D_HUMAN
[Raw transfer]




16W_A_3(4HNF)
KC1D_HUMAN
[Raw transfer]




16W_A_3(4HNI)
KC1E_HUMAN
[Raw transfer]




15G_A_3(4HGT)
KC1D_HUMAN
[Raw transfer]




15G_A_3(4HGT)
KC1D_HUMAN
[Raw transfer]




5 PsiBlast_PDB 74.2755% -95 - C1 -3OP5 6.4 VRK1_HUMAN
38 HHSearch 54.1432% -97 - C1 -4HGT 5.6 KC1D_HUMAN
37 HHSearch 48.7833%-102 - C1 -4KB8 5.6 KC1D_HUMAN
13 PsiBlast_PDB 48.3834% -86 - C1 -4KBK 6.6 KC1D_HUMAN
15 PsiBlast_PDB 48.0134% -84 - C1 -3UYT 7.5 KC1D_HUMAN
17 PsiBlast_PDB 47.5334% -81 - C1 -4HNF 6.6 KC1D_HUMAN
8 PsiBlast_PDB 45.9334% -85 - C1 -4HNI 6.2 KC1E_HUMAN