@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00089_THRB_R: (2014-08-23 )
MLHVRGLGLPGCLALAALASLVHSQHVFLAPQQALSLLQRVRRANSGFLEELRKGNLERECVEEQCSYEEAFEALESPQDTDVFWAKYTVCDSVRKPRETFMDCLEGRCAMDLGLNYHGNVSVTHTGIECQLWRSRYPHRPDINSTTHPGADLKENFCRNPDSSTSGPWCYTTDPTVRREECSIPVCGQEGRTTVKMTPRSRGSKENLSPPLGECLLERGRLYQGNLAVTTLGSPCLAWDSLPTKTLSKYQNFDPEVKLVQNFCRNPDRDEEGAWCFVAQQPGFEYCSLNYCDEAVGEENHDGDESIAGRTTDAEFHTFFDERTFGLGEADCGLRPLFEKKSLTDKTEKELLDSYIDGRIVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYIHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLQAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPYNHRWYQMGIVSWGEGCDRNGKYGFYTHVFRLKRWMQKVIDQHR

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDO_C_3(2ANM)

[Raw transfer]




RA4_H_4(1YPM)
?
[Raw transfer]




1Z0_A_3(1DOJ)
?
[Raw transfer]




T15_A_3(3C1K)
?
[Raw transfer]




GAH_C_3(1XM1)
?
[Raw transfer]




S00_H_5(3RM2)
?
[Raw transfer]




RA8_H_6(1YPL)
?
[Raw transfer]




121_H_9(1GHY)
?
[Raw transfer]




UNB_A_4(2BDY)
?
[Raw transfer]




UNB_A_4(2BDY)
?
[Raw transfer]




BMZ_H_7(1GHX)
?
[Raw transfer]




062_A_3(1ZRB)

[Raw transfer]




00P_A_5(1D9I)
?
[Raw transfer]




00R_A_5(1D6W)

[Raw transfer]




BLI_B_2(1JWT)

[Raw transfer]




382_C_3(1ZGI)
?
[Raw transfer]




CCR_D_4(1YPK)
?
[Raw transfer]




0ZJ_D_11(1NU9)
?
[Raw transfer]




UIP_H_6(1YPE)

[Raw transfer]




501_A_3(1ZGV)
?
[Raw transfer]




0ZJ_A_5(1NU9)
?
[Raw transfer]




F25_H_4(2CN0)

[Raw transfer]




I25_H_4(2V3H)

[Raw transfer]




I26_H_4(2V3O)
?
[Raw transfer]




177_A_3(1TA6)
?
[Raw transfer]




10U_H_7(3BIU)
?
[Raw transfer]




T76_A_3(1NT1)

[Raw transfer]




ESH_H_4(2CF8)
?
[Raw transfer]




348_H_4(2CF9)
?
[Raw transfer]




11U_H_5(3BIV)
?
[Raw transfer]




L17_A_3(1Z71)

[Raw transfer]




1NK_H_3(4JZE)
?
[Raw transfer]




170_A_3(1SL3)
?
[Raw transfer]




CHAIN_H_2(1NT1)

[Raw transfer]

-

UIB_D_4(1YPJ)

[Raw transfer]




UIR_D_4(1YPG)
?
[Raw transfer]




CHAIN_I_3(1GHX)
?
[Raw transfer]

-

CHAIN_I_2(2CN0)

[Raw transfer]

-

CHAIN_I_2(2CF8)
?
[Raw transfer]

-

CHAIN_I_3(1GHY)
?
[Raw transfer]

-

BBS_B_3(1EOL)
?
[Raw transfer]




NAS_I_4(1QUR)

[Raw transfer]




BBS_B_3(1EOJ)
?
[Raw transfer]




INH_A_2(3BG8)

[Raw transfer]




PIP_I_7(1QUR)

[Raw transfer]




APH_I_6(1QUR)

[Raw transfer]




CHAIN_L_2(2WPH)
?
[Raw transfer]

-

CHAIN_C_3(2OD3)
?
[Raw transfer]

-

CHAIN_B_2(1EOL)
?
[Raw transfer]

-

CHAIN_B_2(3C1K)
?
[Raw transfer]

-

CHAIN_C_3(1DM4)
?
[Raw transfer]

-

CHAIN_B_2(1EOJ)
?
[Raw transfer]

-

CHAIN_B_2(2BDY)
?
[Raw transfer]

-

CHAIN_I_3(1YPJ)

[Raw transfer]

-

CHAIN_I_3(1YPM)
?
[Raw transfer]

-

CHAIN_D_3(4AZ2)
?
[Raw transfer]

-

CHAIN_B_2(1ZRB)

[Raw transfer]

-

CHAIN_B_2(1TA6)
?
[Raw transfer]

-

CHAIN_B_2(1SL3)
?
[Raw transfer]

-

CHAIN_B_2(1ZGV)
?
[Raw transfer]

-

CHAIN_B_2(1TA2)
?
[Raw transfer]

-

CHAIN_I_3(1YPE)

[Raw transfer]

-

CHAIN_B_2(1ZGI)
?
[Raw transfer]

-

CHAIN_I_2(1D6W)

[Raw transfer]

-

CHAIN_I_2(2V3H)

[Raw transfer]

-

GLU_I_5(1QUR)

[Raw transfer]




CHAIN_B_2(1NM6)
?
[Raw transfer]

-

CHAIN_D_3(4AYY)
?
[Raw transfer]

-

CHAIN_I_2(1D9I)
?
[Raw transfer]

-

CHAIN_B_2(1Z71)

[Raw transfer]

-

CHAIN_I_2(2V3O)
?
[Raw transfer]

-

CHAIN_I_3(3BIV)
?
[Raw transfer]

-

CHAIN_F_6(3HKI)

[Raw transfer]

-

CHAIN_I_3(3RM2)
?
[Raw transfer]

-

CHAIN_D_3(4AYV)
?
[Raw transfer]

-

CHAIN_I_2(2CF9)
?
[Raw transfer]

-

CHAIN_I_3(1YPG)
?
[Raw transfer]

-

CHAIN_I_3(1QUR)

[Raw transfer]

-

CHAIN_C_3(3HKI)
?
[Raw transfer]

-

CHAIN_C_3(2PUX)
?
[Raw transfer]

-

CHAIN_I_3(1YPK)
?
[Raw transfer]

-

CHAIN_I_3(1YPL)
?
[Raw transfer]

-

CHAIN_I_3(3BIU)
?
[Raw transfer]

-

5 PsiBlast_PDB 91.0288% -95 - C5 -1DOJ 7.2 ?
8 PsiBlast_PDB 90.5788% -99 - C5 -1EOJ 12.2 ?
73 HHSearch 90.3489% -94 - C5 -2BDY 8.9 ?
24 PsiBlast_CBE 90.1588% -98 - C5 -1ZRB 9.0
9 PsiBlast_PDB 90.0388% -98 - C5 -1EOL 10.2 ?
6 PsiBlast_PDB 89.9988% -94 - C5 -1XM1 9.2 ?
3 PsiBlast_PDB 89.9288% -97 - C5 -1JWT 6.0
14 PsiBlast_PDB 89.8288% -96 - C5 -1D9I 6.5 ?
25 PsiBlast_CBE 89.7188% -98 - C5 -1ZGV 7.9 ?
16 PsiBlast_PDB 89.6588% -96 - C5 -1NM6 7.2 ?
13 PsiBlast_PDB 89.6388% -98 - C5 -1D6W 6.4
18 PsiBlast_PDB 89.6188% -96 - C5 -1TA2 7.2 ?
20 PsiBlast_PDB 89.4888% -96 - C5 -1SL3 9.7 ?
27 PsiBlast_CBE 89.3488% -95 - C5 -1Z71 9.9
21 PsiBlast_CBE 89.1788% -92 - C5 -1NU9 6.8 ?
26 PsiBlast_CBE 89.1088% -96 - C5 -1ZGI 8.2 ?
23 PsiBlast_CBE 89.0488% -97 - C5 -3C1K 8.5 ?
7 PsiBlast_PDB 88.9788% -93 - C5 -1NU9 6.2 ?
19 PsiBlast_PDB 88.7588% -99 - C5 -1TA6 9.4 ?
17 PsiBlast_PDB 87.8988% -98 - C5 -1NT1 9.6
29 PsiBlast_CBE 87.2697%-112 - C5 -2PUX 6.5 ?
32 PsiBlast_CBE 85.4796%-111 - C5 -3HKI 5.9 ?
31 PsiBlast_CBE 84.9096%-113 - C5 -3HKI 7.0
41 PsiBlast_CBE 84.7188%-111 - C5 -4AYY 6.6 ?
37 PsiBlast_CBE 84.6590%-111 - C5 -2OD3 6.7 ?
55 PsiBlast_CBE 84.5188%-112 - C5 -1YPJ 8.0
42 PsiBlast_CBE 84.4988%-111 - C5 -4AYV 6.4 ?
40 PsiBlast_CBE 84.4888%-111 - C5 -4AZ2 6.6 ?
58 PsiBlast_CBE 84.3288%-114 - C5 -1QUR 4.5
75 HHSearch 84.2088%-109 - C5 -3RM2 9.5 ?
57 PsiBlast_CBE 83.7588%-112 - C5 -1YPE 8.2
48 PsiBlast_CBE 83.5688%-110 - C5 -2CN0 8.8
54 PsiBlast_CBE 83.3988%-111 - C5 -1YPK 8.6 ?
60 PsiBlast_CBE 83.3688%-111 - C5 -1GHX 4.7 ?
59 PsiBlast_CBE 83.3688%-112 - C5 -1GHY 4.3 ?
46 PsiBlast_CBE 83.3688%-109 - C5 -2V3O 7.8 ?
47 PsiBlast_CBE 83.3288%-110 - C5 -2V3H 6.5
45 PsiBlast_CBE 83.3188%-106 - C5 -3BIU 6.3 ?
50 PsiBlast_CBE 83.2688%-109 - C5 -2CF8 9.2 ?
51 PsiBlast_CBE 83.1288%-109 - C5 -2ANM 7.9
52 PsiBlast_CBE 83.0388%-107 - C5 -1YPM 7.6 ?
49 PsiBlast_CBE 83.0288%-109 - C5 -2CF9 8.6 ?
56 PsiBlast_CBE 82.9288%-109 - C5 -1YPG 8.2 ?
44 PsiBlast_CBE 82.9288%-110 - C5 -3BIV 6.4 ?
53 PsiBlast_CBE 82.8588%-111 - C5 -1YPL 7.1 ?
39 PsiBlast_CBE 81.8388%-108 - C5 -1DM4 4.9 ?
88 HHSearch 64.7139%-103 - C5 -2WPH 4.8 ?
93 HHSearch 62.4236% -96 - C5 -3BG8 2.8
89 HHSearch 61.5136% -96 - C5 -4JZE 6.4 ?