@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00089_TPA_HU: (2014-08-23 )
MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARSYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKCCEIDTRATCYEDQGISYRGTWSTAESGAECTNWNSSALAQKPYSGRRPDAIRLGLGNHNYCRNPDRDSKPWCYVFKAGKYSSEFCSTPACSEGNSDCYFGNGSAYRGTHSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNYCRNPDGDAKPWCHVLKNRRLTWEYCDVPSCSTCGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_D_3(1A5H)

[Raw transfer]
-
7IN_D_4(1VJA)
?
[Raw transfer]



BBA_B_6(1A5H)

[Raw transfer]



239_E_5(1OWH)
UROK_HUMAN
[Raw transfer]



5IN_D_4(1VJ9)
?
[Raw transfer]



696_B_3(1O5A)
?
[Raw transfer]



675_E_5(1OWE)
?
[Raw transfer]



2IN_D_4(1SC8)
?
[Raw transfer]



UI2_E_5(1SQO)
UROK_HUMAN
[Raw transfer]



UI1_E_5(1SQA)
?
[Raw transfer]



BEN_B_2(2OQ5)
TM11E_HUMAN
[Raw transfer]



132_B_5(1GJ7)
?
[Raw transfer]



133_B_5(1GJ8)
?
[Raw transfer]



INH_A_2(3BG8)

[Raw transfer]



ABV_U_3(3MHW)
?
[Raw transfer]



CR9_B_3(1O5C)
?
[Raw transfer]



PBZ_D_4(1FIW)
ACRO_SHEEP
[Raw transfer]



438_B_5(3IG6)
?
[Raw transfer]



ESI_B_3(1O5B)
?
[Raw transfer]



CHAIN_C_3(1BDA)
?
[Raw transfer]
-
CHAIN_D_4(1BDA)
?
[Raw transfer]
-
CHAIN_I_2(1A5I)
URT1_DESRO
[Raw transfer]
-
CIT_B_6(1O5B)
?
[Raw transfer]



CH2_C_5(1BDA)
?
[Raw transfer]



CH2_D_6(1BDA)
?
[Raw transfer]



CH2_I_3(1A5I)
URT1_DESRO
[Raw transfer]
1 PsiBlast_PDB 86.11100%-111 - C1 -1BDA 4.0 ?
22 PsiBlast_CBE 85.44100%-118 - C1 -1A5H 7.2
21 PsiBlast_CBE 84.88100%-113 - C1 -1BDA 3.6 ?
3 PsiBlast_PDB 77.7577%-109 - C1 -1A5I 4.5 URT1_DESRO
15 PsiBlast_PDB 65.0345%-104 - C1 -1OWE 4.8 ?
16 PsiBlast_PDB 64.8045%-106 - C1 -1OWH 4.8 UROK_HUMAN
10 PsiBlast_PDB 64.6145%-103 - C1 -3IG6 5.1 ?
8 PsiBlast_PDB 64.3744%-105 - C1 -1VJ9 7.3 ?
14 PsiBlast_PDB 64.0245%-104 - C1 -1LMW - ?
7 PsiBlast_PDB 63.9544%-100 - C1 -1SC8 5.5 ?
9 PsiBlast_PDB 63.9244%-102 - C1 -1VJA 5.9 ?
13 PsiBlast_PDB 63.6645%-104 - C1 -1O5C 5.8 ?
38 HHSearch 63.5246%-103 - C1 -3MHW 2.7 ?
17 PsiBlast_PDB 63.4545%-101 - C1 -1SQA 5.9 ?
19 PsiBlast_PDB 63.3745%-105 - C1 -1GJ7 6.0 ?
11 PsiBlast_PDB 63.2545%-104 - C1 -1O5A 5.7 ?
18 PsiBlast_PDB 63.1945%-102 - C1 -1SQO 5.1 UROK_HUMAN
20 PsiBlast_PDB 62.3445%-103 - C1 -1GJ8 5.4 ?
12 PsiBlast_PDB 62.2445%-103 - C1 -1O5B 4.3 ?
48 HHSearch 61.9635%-112 - C1 -2OQ5 3.1 TM11E_HUMAN
60 HHSearch 56.2532% -97 - C1 -1FIW 3.2 ACRO_SHEEP
47 HHSearch 54.5035% -96 - C1 -3BG8 4.0
42 HHSearch 52.6235% -91 - C1 -4IGD - MASP1_HUMAN