@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00089_TRY3_H: (2014-08-24 )
MCGPDDRCPARWPGPGRAVKCGKGLAAARPGRVERGGAQRGGAGLELHPLLGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTTPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAANS

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0IV_A_2(1ZZZ)
TRY1_BOVIN
[Raw transfer]




BEN_A_4(1J14)
TRY2_RAT
[Raw transfer]




PR1_A_5(1F0T)
TRY1_BOVIN
[Raw transfer]




BEN_C_3(1ANE)
TRY2_RAT
[Raw transfer]




BEN_A_3(1ANC)
TRY2_RAT
[Raw transfer]




BEN_A_3(1AND)
TRY2_RAT
[Raw transfer]




BEN_A_5(1DPO)
TRY2_RAT
[Raw transfer]




RPR_A_4(1F0U)
TRY1_BOVIN
[Raw transfer]




BAM_X_2(2BY6)
TRY1_BOVIN
[Raw transfer]




BAM_X_2(2BY8)
TRY1_BOVIN
[Raw transfer]




BAM_X_2(2BY5)
TRY1_BOVIN
[Raw transfer]




BEN_A_3(1BRA)
TRY2_RAT
[Raw transfer]




BAM_X_2(2BY9)
TRY1_BOVIN
[Raw transfer]




BEN_A_3(4I8H)
TRY1_BOVIN
[Raw transfer]




BEN_A_3(1ANB)
TRY2_RAT
[Raw transfer]




BAM_X_2(2BY7)
TRY1_BOVIN
[Raw transfer]




BAM_X_2(2BYA)
TRY1_BOVIN
[Raw transfer]




BEN_B_6(1TRM)
TRY2_RAT
[Raw transfer]




BEN_A_3(2TRM)
TRY2_RAT
[Raw transfer]




BEN_A_5(1TRM)
TRY2_RAT
[Raw transfer]




IMA_A_4(1LQE)
TRY1_BOVIN
[Raw transfer]




BEN_A_8(2AIQ)
VSPCA_AGKCO
[Raw transfer]




BEN_A_3(1LO6)
KLK6_HUMAN
[Raw transfer]




PBZ_A_11(2BDG)
KLK4_HUMAN
[Raw transfer]




FMT_A_14(3L3T)
TRY3_HUMAN
[Raw transfer]




FMT_A_16(3L33)
TRY3_HUMAN
[Raw transfer]




ZEN_A_4(1QL9)
TRY2_RAT
[Raw transfer]




K7J_A_2(2QXI)
KLK7_HUMAN
[Raw transfer]




CHAIN_B_2(1YF4)
TRYP_PIG
[Raw transfer]

-

EDO_E_6(3FP7)
TRY2_RAT
[Raw transfer]




EDO_E_8(3FP6)
TRY2_RAT
[Raw transfer]




EDO_E_7(3FP8)
TRY2_RAT
[Raw transfer]




MOH_A_6(1FN6)
?
[Raw transfer]




CHAIN_I_3(1FXY)
TRY1_HUMAN
[Raw transfer]

-

CHAIN_I_2(3FP7)
TRY2_RAT
[Raw transfer]

-

CHAIN_B_2(2PSX)
KLK5_HUMAN
[Raw transfer]

-

ACE_B_4(2PSX)
KLK5_HUMAN
[Raw transfer]




CH2_I_5(1FXY)
TRY1_HUMAN
[Raw transfer]




2 PsiBlast_PDB 98.7399%-114 - C1 -3L33 2.8 TRY3_HUMAN
3 PsiBlast_PDB 98.0099%-114 - C1 -3L3T 2.8 TRY3_HUMAN
16 PsiBlast_CBE 97.5699%-111 - C1 -3L33 - TRY3_HUMAN
13 PsiBlast_CBE 97.3499%-109 - C1 -3L3T - TRY3_HUMAN
87 PsiBlast_CBE 91.4872%-109 - C1 -1F0U 8.2 TRY1_BOVIN
62 PsiBlast_CBE 91.0277%-109 - C1 -1J14 3.0 TRY2_RAT
68 PsiBlast_CBE 90.8477%-109 - C1 -1DPO 3.3 TRY2_RAT
49 PsiBlast_CBE 90.5478%-108 - C1 -1ANE 3.2 TRY2_RAT
69 PsiBlast_CBE 90.5077%-107 - C1 -1AND 3.2 TRY2_RAT
89 PsiBlast_CBE 90.4472%-108 - C1 -1ZZZ 4.0 TRY1_BOVIN
88 PsiBlast_CBE 90.2172%-108 - C1 -1F0T 5.6 TRY1_BOVIN
30 PsiBlast_CBE 90.0078%-105 - C1 -1YF4 8.8 TRYP_PIG
57 PsiBlast_CBE 89.9477%-108 - C1 -3FP7 3.6 TRY2_RAT
66 PsiBlast_CBE 89.9177%-110 - C1 -1TRM 3.2 TRY2_RAT
86 PsiBlast_CBE 89.8472%-109 - C1 -1LQE 7.2 TRY1_BOVIN
63 PsiBlast_CBE 89.8477%-108 - C1 -1ANB 3.6 TRY2_RAT
48 PsiBlast_CBE 89.8378%-108 - C1 -3FP6 3.1 TRY2_RAT
65 PsiBlast_CBE 89.8177%-112 - C1 -2TRM 3.1 TRY2_RAT
61 PsiBlast_CBE 89.7777%-107 - C1 -1QL9 6.8 TRY2_RAT
84 PsiBlast_CBE 89.7672%-107 - C1 -2BY6 3.4 TRY1_BOVIN
80 PsiBlast_CBE 89.7572%-107 - C1 -2BYA 3.5 TRY1_BOVIN
45 PsiBlast_CBE 89.7578%-108 - C1 -1FN6 2.8 ?
76 PsiBlast_CBE 89.5477%-106 - C1 -1BRA 2.7 TRY2_RAT
82 PsiBlast_CBE 89.5172%-108 - C1 -2BY8 3.5 TRY1_BOVIN
83 PsiBlast_CBE 89.4972%-108 - C1 -2BY7 3.5 TRY1_BOVIN
85 PsiBlast_CBE 89.4172%-107 - C1 -2BY5 3.5 TRY1_BOVIN
56 PsiBlast_CBE 89.2777%-107 - C1 -3FP8 2.1 TRY2_RAT
81 PsiBlast_CBE 89.1872%-107 - C1 -2BY9 3.4 TRY1_BOVIN
108 HHSearch 89.1273%-106 - C1 -4I8H 3.3 TRY1_BOVIN
64 PsiBlast_CBE 88.9777%-107 - C1 -1ANC 3.5 TRY2_RAT
67 PsiBlast_CBE 88.6777%-106 - C1 -1TRM 3.1 TRY2_RAT
110 HHSearch 84.0763%-104 - C1 -1FXY 4.6 TRY1_HUMAN
111 HHSearch 75.3343%-106 - C1 -1LO6 3.0 KLK6_HUMAN
122 HHSearch 75.1642% -98 - C1 -2QXI 4.5 KLK7_HUMAN
120 HHSearch 73.9840% -98 - C1 -2BDG 3.0 KLK4_HUMAN
113 HHSearch 73.9045% -93 - C1 -2PSX 3.8 KLK5_HUMAN
130 HHSearch 70.5440% -92 - C1 -2AIQ 3.0 VSPCA_AGKCO