@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00102_PTN3_H: (2014-08-24 )
MTSRLRALGGRINNIRTSELPKEKTRSEVICSIHFLDGVVQTFKVTKQDTGQVLLDMVHNHLGVTEKEYFGLQHDDDSVDSPRWLEASKAIRKQLKGGFPCTLHFRVRFFIPDPNTLQQEQTRHLYFLQLKMDICEGRLTCPLNSAVVLASYAVQSHFGDYNSSIHHPGYLSDSHFIPDQNEDFLTKVESLHEQHSGLKQSEAESCYINIARTLDFYGVELHSGRDLHNLDLMIGIASAGVAVYRKYICTSFYPWVNILKISFKRKKFFIHQRQKQAESREHIVAFNMLNYRSCKNLWKSCVEHHTFFQAKKLLPQEKNVLSQYWTMGSRNTKKSVNNQYCKKVIGGMVWNPAMRRSLSVEHLETKSLPSRSPPITPNWRSPRLRHEIRKPRHSSADNLANEMTYITETEDVFYTYKGSLAPQDSDSEVSQNRSPHQESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLVLIRITPDEDGKFGFNLKGGVDQKMPLVVSRINPESPADTCIPKLNEGDQIVLINGRDISEHTHDQVVMFIKASRESHSRELALVIRRRAVRSFADFKSEDELNQLFPEAIFPMCPEGGDTLEGSMAQLKKGLESGTVLIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQGNEDYINASYVNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRVDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEEGLVQMLDPS

Atome Classification :

(12 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

588_B_2(1ONY)
PTN1_HUMAN
[Raw transfer]



515_B_2(1NNY)
PTN1_HUMAN
[Raw transfer]



989_B_2(1NL9)
PTN1_HUMAN
[Raw transfer]



968_B_2(1ONZ)
PTN1_HUMAN
[Raw transfer]



794_B_2(1NO6)
PTN1_HUMAN
[Raw transfer]



3UN_A_6(2H03)

[Raw transfer]



B26_A_3(4GE6)
PTN9_HUMAN
[Raw transfer]



1CG_A_2(4I8N)
PTN1_HUMAN
[Raw transfer]



901_B_2(1NZ7)
PTN1_HUMAN
[Raw transfer]



EDO_A_4(2BZL)

[Raw transfer]



EDO_A_4(2P6X)
PTN22_HUMAN
[Raw transfer]
33 HHSearch 79.3139% -88 - C2 -2BZL 2.5
15 PsiBlast_PDB 75.8836% -90 - C2 -1NO6 4.6 PTN1_HUMAN
14 PsiBlast_PDB 75.5336% -88 - C2 -1NNY 8.4 PTN1_HUMAN
13 PsiBlast_PDB 75.4136% -90 - C2 -1NL9 5.6 PTN1_HUMAN
17 PsiBlast_PDB 74.6036% -87 - C2 -1ONY 5.8 PTN1_HUMAN
18 PsiBlast_PDB 74.5436% -91 - C2 -1ONZ 5.3 PTN1_HUMAN
16 PsiBlast_PDB 74.2536% -88 - C2 -1NZ7 4.8 PTN1_HUMAN
11 PsiBlast_PDB 71.9535% -84 - C2 -4I8N 4.7 PTN1_HUMAN
45 HHSearch 71.6237% -83 - C2 -2H4V - PTPRG_HUMAN
9 PsiBlast_PDB 71.0836% -86 - C2 -2H03 6.8
36 HHSearch 69.7637% -85 - C2 -4GE6 6.5 PTN9_HUMAN
50 HHSearch 66.2936% -85 - C2 -2P6X 3.6 PTN22_HUMAN