@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00102_PTPRG_: (2014-08-25 )
MRRLLEPCWWILFLKITSSVLHYVVCFPALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGEEYQELQLDGFDNESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQRLHDRVVSKSAVRDSWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIMNYMISYSWTKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAASASKQAARPVLATTEALASPGPDGDSSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSPTPSSPNRTAEGGHQTIPGHEQDHTAVPTDQTGGRRDAGPGLDPDMVTSTQVPPTATEEQYAGSDPKRPEMPSKKPMSRGDRFSEDSRFITVNPAEKNTSGMISRPAPGRMEWIIPLIVVSALTFVCLILLIAVLVYWRGCNKIKSKGFPRRFREVPSSGERGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAMLSLVSTKENGNGPMTVDKNGAVLIADESDPAESMESLV

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NX4_A_2(3QCJ)

[Raw transfer]



NX5_A_2(3QCK)

[Raw transfer]



NX2_A_2(3QCH)

[Raw transfer]



NXY_B_5(3QCE)

[Raw transfer]



NX3_A_2(3QCI)

[Raw transfer]



NXY_B_4(3QCF)

[Raw transfer]



NXV_A_2(3QCL)

[Raw transfer]



NXW_B_5(3QCM)

[Raw transfer]



PTR_A_2(2CJZ)
PTN5_HUMAN
[Raw transfer]



B26_A_3(4GE6)
PTN9_HUMAN
[Raw transfer]



MES_B_6(3QCM)

[Raw transfer]



EDO_A_15(2H4V)
PTPRG_HUMAN
[Raw transfer]



EDO_A_4(2P6X)
PTN22_HUMAN
[Raw transfer]



IPA_A_5(3S3E)
PTP10_DROME
[Raw transfer]



CHAIN_C_3(1YGR)
PTPRC_HUMAN
[Raw transfer]
-
40 HHSearch 72.6735% -89 - C2 -1YGR 5.7 PTPRC_HUMAN
22 PsiBlast_CBE 58.52100% -86 - C2 -3QCE 7.0
25 PsiBlast_CBE 58.4199% -83 - C2 -3QCM 10.2
13 PsiBlast_PDB 58.2799% -81 - C2 -3QCL 8.4
21 PsiBlast_CBE 58.22100% -85 - C2 -3QCF 7.0
10 PsiBlast_PDB 58.21100% -82 - C2 -3QCJ 9.1
11 PsiBlast_PDB 57.91100% -80 - C2 -3QCK 7.5
8 PsiBlast_PDB 57.79100% -82 - C2 -3QCH 7.6
9 PsiBlast_PDB 57.42100% -80 - C2 -3QCI 7.4
41 HHSearch 57.1698% -83 - C2 -2H4V 3.0 PTPRG_HUMAN
42 HHSearch 48.2944% -70 - C2 -3S3E 2.4 PTP10_DROME
54 HHSearch 44.4336% -58 - C2 -2P6X 3.4 PTN22_HUMAN
60 HHSearch 43.9237% -73 - C2 -2CJZ 4.1 PTN5_HUMAN
49 HHSearch 43.7538% -66 - C2 -4GE6 4.6 PTN9_HUMAN