@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_NR1H4_: (2014-08-25 )
MVMQFQGLENPIQISLHHSHRLSGFVPEGMSVKPAKGMLTEHAAGPLGQNLDLESYSPYNNVPFPQVQPQISSSSYYSNLGFYPQQPEDWYSPGIYELRRMPAETGYQGETEVSEMPVTKKPRMAAASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTANEDDSEGRDLRQVTSTTKFCREKTELTADQQTLLDYIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPAGHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKMYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IVM_A_9(4II6)
NR1H4_HUMAN
[Raw transfer]




IVM_B_14(4II6)

[Raw transfer]




OOK_C_6(3OOK)

[Raw transfer]




OOK_A_5(3OOK)
NR1H4_HUMAN
[Raw transfer]




OOF_A_5(3OOF)
NR1H4_HUMAN
[Raw transfer]




OLF_C_6(3OLF)

[Raw transfer]




OOF_C_6(3OOF)

[Raw transfer]




OMM_A_5(3OMM)
NR1H4_HUMAN
[Raw transfer]




OLF_A_5(3OLF)
NR1H4_HUMAN
[Raw transfer]




OMM_C_6(3OMM)

[Raw transfer]




OMK_A_5(3OMK)
NR1H4_HUMAN
[Raw transfer]




OMK_C_6(3OMK)

[Raw transfer]




OKI_A_5(3OKI)
NR1H4_HUMAN
[Raw transfer]




OKI_C_6(3OKI)

[Raw transfer]




33Y_A_2(3FLI)

[Raw transfer]




59G_A_5(3RUT)

[Raw transfer]




CHC_G_7(1OT7)
NR1H4_RAT
[Raw transfer]




088_A_3(3HC6)

[Raw transfer]




IU5_F_6(1OT7)

[Raw transfer]




635_A_2(3L1B)

[Raw transfer]




O62_A_3(3DCU)

[Raw transfer]




CHC_G_7(1OSV)
NR1H4_RAT
[Raw transfer]




MUF_B_8(3BEJ)

[Raw transfer]




37G_A_5(3RUU)

[Raw transfer]




CHC_F_6(1OSV)

[Raw transfer]




MUF_A_7(3BEJ)
NR1H4_HUMAN
[Raw transfer]




82X_A_3(3HC5)

[Raw transfer]




P88_A_3(3P88)

[Raw transfer]




FEX_B_2(1OSH)

[Raw transfer]




064_A_3(3DCT)

[Raw transfer]




034_A_4(3RVF)

[Raw transfer]




89P_A_3(3P89)

[Raw transfer]




643_A_3(3FXV)

[Raw transfer]




708_A_3(3GD2)

[Raw transfer]




OKH_A_3(3OKH)

[Raw transfer]




25 PsiBlast_CBE 90.4394%-128 - C3 -3OOF 11.7
20 PsiBlast_PDB 90.2394%-127 - C3 -3OOK 12.1 NR1H4_HUMAN
16 PsiBlast_PDB 89.7294%-124 - C3 -3OLF 11.7 NR1H4_HUMAN
27 PsiBlast_CBE 89.6294%-129 - C3 -3OMK 11.7
18 PsiBlast_PDB 89.5294%-127 - C3 -3OMM 11.6 NR1H4_HUMAN
15 PsiBlast_PDB 89.5294%-125 - C3 -3OKI 10.8 NR1H4_HUMAN
28 PsiBlast_CBE 89.1994%-127 - C3 -3OLF 11.9
24 PsiBlast_CBE 89.1994%-128 - C3 -3OOK 12.1
17 PsiBlast_PDB 89.1794%-127 - C3 -3OMK 11.7 NR1H4_HUMAN
19 PsiBlast_PDB 89.1294%-123 - C3 -3OOF 11.7 NR1H4_HUMAN
26 PsiBlast_CBE 89.0394%-126 - C3 -3OMM 12.0
29 PsiBlast_CBE 88.0994%-126 - C3 -3OKI 10.5
6 PsiBlast_PDB 87.3395%-126 - C3 -3HC5 11.7
11 PsiBlast_PDB 87.0595%-123 - C3 -3RUU 12.0
14 PsiBlast_PDB 87.0494%-128 - C3 -3OKH 7.2
49 HHSearch 86.8095%-136 - C3 -1OSH 11.0
22 PsiBlast_CBE 86.6098%-124 - C3 -1OSV 9.9
21 PsiBlast_CBE 86.5494%-125 - C3 -3BEJ 9.9
4 PsiBlast_PDB 86.4495%-123 - C3 -3DCT 11.3
5 PsiBlast_PDB 86.2995%-121 - C3 -3DCU 11.4
2 PsiBlast_PDB 86.1798%-125 - C3 -1OSV 9.3 NR1H4_RAT
8 PsiBlast_PDB 86.0594%-133 - C3 -3FLI 9.6
1 PsiBlast_PDB 85.9994%-126 - C3 -3BEJ 10.0 NR1H4_HUMAN
10 PsiBlast_PDB 85.8595%-117 - C3 -3RUT 11.5
23 PsiBlast_CBE 85.7198%-121 - C3 -1OT7 8.3
12 PsiBlast_PDB 85.6895%-131 - C3 -3L1B 10.6
3 PsiBlast_PDB 85.6698%-116 - C3 -1OT7 8.8 NR1H4_RAT
32 PsiBlast_CBE 85.4494%-121 - C3 -3GD2 11.9
33 PsiBlast_CBE 85.1593%-121 - C3 -3P88 11.5
7 PsiBlast_PDB 84.7495%-123 - C3 -3RVF 10.8
30 PsiBlast_CBE 84.2694%-116 - C3 -3HC6 11.8
13 PsiBlast_PDB 84.0494%-132 - C3 -3FXV 11.5
31 PsiBlast_CBE 81.4594%-124 - C3 -3P89 12.1
35 PsiBlast_CBE 74.4994%-103 - C3 -4II6 Error NR1H4_HUMAN
34 PsiBlast_CBE 71.6294%-112 - C3 -4II6 Error