@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARA_: (2014-08-26 )
MVDTESPICPLSPLEADDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFSFTEYQYLGSGPGSDGSVITDTLSPAPSPSSVTHPAAPGGAEEPSSVALNIECRICGDRASGYHYGVHACEGCKGFFRRTIRLKLAYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEQDPEDAETADLKSLAKRIYEAYLKNFNMNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLKLHLQTNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]



S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]



MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]



735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]



MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]



RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]



13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]



ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]



CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]



ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]



WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]



WY1_B_6(4BCR)
PPARA_HUMAN
[Raw transfer]



1FA_A_3(2Q5G)
PPARD_HUMAN
[Raw transfer]



471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]



471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]



GW0_A_2(3TKM)
PPARD_HUMAN
[Raw transfer]



08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]



471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]



Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]



471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]



WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]



WY1_B_8(4BCR)
PPARA_HUMAN
[Raw transfer]



GW9_D_12(3E00)
PPARG_HUMAN
[Raw transfer]



PLB_D_12(3DZU)
PPARG_HUMAN
[Raw transfer]



NACID_C_1(1DSZ)

[Raw transfer]
-
CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
CHAIN_D_4(2NPA)
PPARA_HUMAN
[Raw transfer]
-
NACID_C_1(1A6Y)
NR1D1_HUMAN
[Raw transfer]
-
NACID_B_1(2A66)
NR5A2_HUMAN
[Raw transfer]
-
NACID_C_1(2HAN)

[Raw transfer]
-
CHAIN_G_7(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
15 PsiBlast_PDB 96.2965%-124 - C3 -3E00 4.2 PPARG_HUMAN
14 PsiBlast_PDB 93.4565%-130 - C3 -3DZU 5.5 PPARG_HUMAN
31 PsiBlast_CBE 91.3097%-147 - C3 -2NPA 9.4 PPARA_HUMAN
27 PsiBlast_CBE 90.8797%-140 - C3 -3ET1 6.1 PPARA_HUMAN
12 PsiBlast_PDB 90.5897%-144 - C3 -2P54 9.4 PPARA_HUMAN
3 PsiBlast_PDB 90.4797%-140 - C3 -3SP6 8.0 PPARA_HUMAN
7 PsiBlast_PDB 89.4597%-142 - C3 -3ET1 7.0 PPARA_HUMAN
11 PsiBlast_PDB 89.4197%-138 - C3 -2NPA 9.2 PPARA_HUMAN
24 PsiBlast_CBE 89.3797%-145 - C3 -4BCR 5.6 PPARA_HUMAN
2 PsiBlast_PDB 88.0097%-143 - C3 -4BCR 5.6 PPARA_HUMAN
8 PsiBlast_PDB 87.9597%-142 - C3 -2ZNN 11.2 PPARA_HUMAN
6 PsiBlast_PDB 87.4997%-149 - C3 -3G8I 9.5 PPARA_HUMAN
9 PsiBlast_PDB 87.4497%-140 - C3 -3VI8 11.2 PPARA_HUMAN
13 PsiBlast_PDB 87.1197%-147 - C3 -3FEI 7.5 PPARA_HUMAN
28 PsiBlast_CBE 85.8997%-135 - C3 -1KKQ 11.3 PPARA_HUMAN
30 PsiBlast_CBE 85.4997%-142 - C3 -1KKQ 10.8 PPARA_HUMAN
29 PsiBlast_CBE 85.2997%-139 - C3 -1KKQ 10.8 PPARA_HUMAN
10 PsiBlast_PDB 84.7397%-137 - C3 -1KKQ 10.7 PPARA_HUMAN
19 PsiBlast_PDB 82.8570%-143 - C3 -3TKM 6.2 PPARD_HUMAN
17 PsiBlast_PDB 81.3669%-144 - C3 -2XYW 9.1 PPARD_HUMAN
18 PsiBlast_PDB 80.8469%-144 - C3 -2XYX 7.3 PPARD_HUMAN
16 PsiBlast_PDB 80.7569%-134 - C3 -2XYJ 5.6 PPARD_HUMAN
20 PsiBlast_PDB 75.3569%-133 - C3 -2Q5G 10.5 PPARD_HUMAN
68 HHSearch 27.0850% -90 - C3 -1CIT -
59 HHSearch 26.7855% -88 - C3 -1DSZ -
53 HHSearch 26.6159% -70 - C3 -1A6Y 5.5 NR1D1_HUMAN
65 HHSearch 26.5156% -85 - C3 -2HAN 7.0
61 HHSearch 26.4554% -86 - C3 -1DSZ 5.1
62 HHSearch 26.2749% -79 - C3 -2A66 4.7 NR5A2_HUMAN
63 HHSearch 25.8051% -75 - C3 -3CBB - HNF4A_HUMAN