@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARA_: (2014-08-26 )
MVDTESPLCPLSPLEAGDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]



IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]



MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]



MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]



735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]



RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]



13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]



ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]



ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]



CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]



CHAIN_H_8(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]



WY1_B_6(4BCR)
PPARA_HUMAN
[Raw transfer]



471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]



1FA_A_3(2Q5G)
PPARD_HUMAN
[Raw transfer]



08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]



471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]



471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]



Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]



471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]



ET1_A_3(3ET2)
PPARD_HUMAN
[Raw transfer]



WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]



PLB_D_12(3DZU)
PPARG_HUMAN
[Raw transfer]



WY1_B_8(4BCR)
PPARA_HUMAN
[Raw transfer]



GW9_D_12(3E00)
PPARG_HUMAN
[Raw transfer]



CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
NACID_C_1(1DSZ)

[Raw transfer]
-
NACID_C_1(1A6Y)
NR1D1_HUMAN
[Raw transfer]
-
NACID_B_1(2A66)
NR5A2_HUMAN
[Raw transfer]
-
CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
NACID_C_1(2HAN)

[Raw transfer]
-
CHAIN_G_7(1KKQ)
PPARA_HUMAN
[Raw transfer]
-
15 PsiBlast_PDB 94.8462%-126 - C5 -3E00 4.2 PPARG_HUMAN
14 PsiBlast_PDB 92.3362%-131 - C5 -3DZU 5.5 PPARG_HUMAN
28 PsiBlast_CBE 90.9999%-148 - C5 -2NPA 9.4 PPARA_HUMAN
27 PsiBlast_CBE 90.78100%-141 - C5 -3ET1 6.1 PPARA_HUMAN
12 PsiBlast_PDB 90.74100%-146 - C5 -2P54 9.4 PPARA_HUMAN
5 PsiBlast_PDB 90.34100%-141 - C5 -3SP6 8.0 PPARA_HUMAN
7 PsiBlast_PDB 89.88100%-143 - C5 -3ET1 7.0 PPARA_HUMAN
10 PsiBlast_PDB 89.4699%-139 - C5 -2NPA 9.2 PPARA_HUMAN
24 PsiBlast_CBE 88.94100%-146 - C5 -4BCR 5.6 PPARA_HUMAN
2 PsiBlast_PDB 88.04100%-145 - C5 -4BCR 5.6 PPARA_HUMAN
8 PsiBlast_PDB 87.59100%-143 - C5 -2ZNN 11.2 PPARA_HUMAN
6 PsiBlast_PDB 87.47100%-151 - C5 -3G8I 9.5 PPARA_HUMAN
13 PsiBlast_PDB 87.41100%-149 - C5 -3FEI 7.5 PPARA_HUMAN
9 PsiBlast_PDB 87.24100%-142 - C5 -3VI8 11.2 PPARA_HUMAN
29 PsiBlast_CBE 85.47100%-136 - C5 -1KKQ 11.3 PPARA_HUMAN
31 PsiBlast_CBE 85.30100%-143 - C5 -1KKQ 10.8 PPARA_HUMAN
30 PsiBlast_CBE 85.29100%-140 - C5 -1KKQ 10.8 PPARA_HUMAN
11 PsiBlast_PDB 84.73100%-138 - C5 -1KKQ 10.7 PPARA_HUMAN
17 PsiBlast_PDB 81.4769%-145 - C5 -2XYW 9.1 PPARD_HUMAN
20 PsiBlast_PDB 81.3169%-144 - C5 -3ET2 6.6 PPARD_HUMAN
18 PsiBlast_PDB 81.0169%-144 - C5 -2XYX 7.3 PPARD_HUMAN
16 PsiBlast_PDB 80.7969%-135 - C5 -2XYJ 5.6 PPARD_HUMAN
19 PsiBlast_PDB 75.5869%-133 - C5 -2Q5G 10.5 PPARD_HUMAN
68 HHSearch 25.5650% -89 - C5 -1CIT -
59 HHSearch 25.4054% -89 - C5 -1DSZ -
63 HHSearch 25.1456% -89 - C5 -1DSZ 5.1
65 HHSearch 25.0755% -87 - C5 -2HAN 7.0
61 HHSearch 24.9951% -80 - C5 -2A66 4.9 NR5A2_HUMAN
53 HHSearch 24.9559% -68 - C5 -1A6Y 5.5 NR1D1_HUMAN
64 HHSearch 24.3250% -78 - C5 -3CBB - HNF4A_HUMAN