@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARA_: (2014-08-26 )
MVDTESPICPLSPLEADDLESPLSEEFLQEMGNIQEISQSIGEESSGSFGFADYQYLGSCPGSEGSVITDTLSPASSPSSVSCPVIPASTDESPGSALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDLKDSETADLKSLGKRIHEAYLKNFNMNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIEKLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]




MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]




S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]




735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]




MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]




13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]




ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]




RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]




ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]




CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]




CHAIN_H_8(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

WY1_B_6(4BCR)
PPARA_HUMAN
[Raw transfer]




471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]




WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]




ET1_A_3(3ET2)
PPARD_HUMAN
[Raw transfer]




471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]




471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]




GW0_A_2(3TKM)
PPARD_HUMAN
[Raw transfer]




471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]




08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]




Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]




WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]




PLB_D_12(3DZU)
PPARG_HUMAN
[Raw transfer]




GW9_D_12(3E00)
PPARG_HUMAN
[Raw transfer]




CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

CHAIN_D_4(2NPA)
PPARA_HUMAN
[Raw transfer]

-

NACID_C_1(1A6Y)
NR1D1_HUMAN
[Raw transfer]

-

NACID_C_1(1DSZ)

[Raw transfer]

-

NACID_C_1(2HAN)

[Raw transfer]

-

CHAIN_G_7(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

CHAIN_F_6(1KKQ)
PPARA_HUMAN
[Raw transfer]

-

9 PsiBlast_PDB 93.2362%-123 - C4 -3E00 4.2 PPARG_HUMAN
8 PsiBlast_PDB 90.9762%-127 - C4 -3DZU 4.5 PPARG_HUMAN
31 PsiBlast_CBE 88.7991%-140 - C4 -2NPA 7.7 PPARA_HUMAN
27 PsiBlast_CBE 88.4192%-135 - C4 -3ET1 5.7 PPARA_HUMAN
5 PsiBlast_PDB 87.8291%-137 - C4 -3SP6 6.4 PPARA_HUMAN
14 PsiBlast_PDB 87.7292%-139 - C4 -2P54 7.8 PPARA_HUMAN
24 PsiBlast_CBE 86.8291%-141 - C4 -4BCR 5.8 PPARA_HUMAN
7 PsiBlast_PDB 86.7592%-137 - C4 -3ET1 6.8 PPARA_HUMAN
13 PsiBlast_PDB 86.2391%-132 - C4 -2NPA 8.0 PPARA_HUMAN
11 PsiBlast_PDB 85.8592%-138 - C4 -3VI8 10.7 PPARA_HUMAN
15 PsiBlast_PDB 85.7492%-144 - C4 -3FEI 7.4 PPARA_HUMAN
2 PsiBlast_PDB 85.5791%-138 - C4 -4BCR 5.0 PPARA_HUMAN
6 PsiBlast_PDB 85.4392%-145 - C4 -3G8I 9.2 PPARA_HUMAN
10 PsiBlast_PDB 85.2692%-138 - C4 -2ZNN 10.7 PPARA_HUMAN
29 PsiBlast_CBE 82.7192%-134 - C4 -1KKQ 10.3 PPARA_HUMAN
28 PsiBlast_CBE 82.6692%-130 - C4 -1KKQ 11.1 PPARA_HUMAN
30 PsiBlast_CBE 82.6492%-137 - C4 -1KKQ 7.6 PPARA_HUMAN
12 PsiBlast_PDB 82.1192%-134 - C4 -1KKQ 7.3 PPARA_HUMAN
20 PsiBlast_PDB 80.9967%-137 - C4 -3TKM 6.2 PPARD_HUMAN
17 PsiBlast_PDB 79.8766%-141 - C4 -2XYW 9.0 PPARD_HUMAN
19 PsiBlast_PDB 79.6066%-139 - C4 -3ET2 6.3 PPARD_HUMAN
18 PsiBlast_PDB 79.3366%-141 - C4 -2XYX 7.2 PPARD_HUMAN
16 PsiBlast_PDB 78.0366%-128 - C4 -2XYJ 5.8 PPARD_HUMAN
67 HHSearch 18.7150% -89 - C4 -1CIT -
58 HHSearch 18.0853% -88 - C4 -1DSZ -
61 HHSearch 17.9556% -89 - C4 -1DSZ 5.1
64 HHSearch 17.3054% -86 - C4 -2HAN 7.0
62 HHSearch 17.1651% -80 - C4 -2A66 - NR5A2_HUMAN
60 HHSearch 16.2750% -78 - C4 -3CBB - HNF4A_HUMAN
52 HHSearch 15.7958% -68 - C4 -1A6Y 5.5 NR1D1_HUMAN