@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PRGR_H: (2014-08-26 )
MTELKAKGPRAPHVAGGPPSPEVGSPLLCRPAAGPFPGSQTSDTLPEVSAIPISLDGLLFPRPCQGQDPSDEKTQDQQSLSDVEGAYSRAEATRGAGGSSSSPPEKDSGLLDSVLDTLLAPSGPGQSQPSPPACEVTSSWCLFGPELPEDPPAAPATQRVLSPLMSRSGCKVGDSSGTAAAHKVLPRGLSPARQLLLPASESPHWSGAPVKPSPQAAAVEVEEEDGSESEESAGPLLKGKPRALGGAAAGGGAAAVPPGAAAGGVALVPKEDSRFSAPRVALVEQDAPMAPGRSPLATTVMDFIHVPILPLNHALLAARTRQLLEDESYDGGAGAASAFAPPRSSPCASSTPVAVGDFPDCAYPPDAEPKDDAYPLYSDFQPPALKIKEEEEGAEASARSPRSYLVAGANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASASVSSASSSGSTLECILYKAEGAPPQQGPFAPPPCKAPGASGCLLPRDGLPSTSASAAAAGAAPALYPALGLNGLPQLGYQAAVLKEGLPQVYPPYLNYLRPDSEASQSPQYSFESLPQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVLGGRKFKKFNKVRVVRALDAVALPQPVGVPNESQALSQRFTFSPGQDIQLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHKK

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A2K_B_5(4APU)

[Raw transfer]



AS0_B_5(4A2J)

[Raw transfer]



AS0_A_3(4A2J)
PRGR_HUMAN
[Raw transfer]



STR_A_3(1A28)
PRGR_HUMAN
[Raw transfer]



R18_A_3(1E3K)
PRGR_HUMAN
[Raw transfer]



T98_E_5(1ZUC)

[Raw transfer]



STR_B_4(1A28)

[Raw transfer]



AS0_A_3(2OVH)

[Raw transfer]



NDR_C_3(1SQN)
PRGR_HUMAN
[Raw transfer]



NOG_A_3(3D90)
PRGR_HUMAN
[Raw transfer]



MOF_A_4(1SR7)
PRGR_HUMAN
[Raw transfer]



T98_D_4(1ZUC)
PRGR_HUMAN
[Raw transfer]



NOG_B_4(3D90)

[Raw transfer]



R18_B_4(1E3K)

[Raw transfer]



AS0_C_3(2OVM)

[Raw transfer]



OR8_A_3(4APU)
PRGR_HUMAN
[Raw transfer]



NDR_D_4(1SQN)

[Raw transfer]



AS4_A_4(2Q1H)
?
[Raw transfer]



STR_A_3(4FN9)
?
[Raw transfer]



ORC_B_8(3ZRB)

[Raw transfer]



DEX_A_4(3MNP)

[Raw transfer]



OR8_B_10(3ZR7)

[Raw transfer]



WOW_B_5(3KBA)

[Raw transfer]



GOL_A_3(3MNP)

[Raw transfer]



30X_A_3(3G8O)
PRGR_HUMAN
[Raw transfer]



ORB_A_3(3ZRA)
PRGR_HUMAN
[Raw transfer]



GKK_B_9(3HQ5)

[Raw transfer]



GKK_A_7(3HQ5)
PRGR_HUMAN
[Raw transfer]



MOF_B_5(1SR7)

[Raw transfer]



OR8_A_3(3ZR7)
PRGR_HUMAN
[Raw transfer]



SNL_A_2(3VHU)

[Raw transfer]



LD1_A_2(3VHV)

[Raw transfer]



30X_B_4(3G8O)

[Raw transfer]



OR8_A_3(3ZRB)
PRGR_HUMAN
[Raw transfer]



DHT_A_3(1T7R)

[Raw transfer]



ORB_B_5(3ZRA)

[Raw transfer]



LD2_A_3(3VHV)

[Raw transfer]



CHAIN_B_2(2OVM)

[Raw transfer]
-
CHAIN_B_2(2OVH)

[Raw transfer]
-
CHAIN_B_2(1T7R)

[Raw transfer]
-
MES_A_6(4FN9)
?
[Raw transfer]



CHAIN_B_2(3MNP)

[Raw transfer]
-
9 PsiBlast_PDB 99.13100%-125 - C4 -1A28 7.9 PRGR_HUMAN
13 PsiBlast_PDB 98.77100%-126 - C4 -1E3K 7.1 PRGR_HUMAN
8 PsiBlast_PDB 98.45100%-124 - C4 -4APU 6.2 PRGR_HUMAN
24 PsiBlast_CBE 98.34100%-125 - C4 -4A2J 8.9
6 PsiBlast_PDB 98.26100%-122 - C4 -3ZRB 7.2 PRGR_HUMAN
2 PsiBlast_PDB 98.13100%-124 - C4 -3G8O 6.8 PRGR_HUMAN
26 PsiBlast_CBE 98.10100%-121 - C4 -3ZRA 6.9
33 PsiBlast_CBE 98.00100%-124 - C4 -1ZUC 7.7 PRGR_HUMAN
22 PsiBlast_CBE 97.83100%-128 - C4 -3G8O 6.8
16 PsiBlast_PDB 97.80100%-128 - C4 -1ZUC 8.0
15 PsiBlast_PDB 97.80100%-126 - C4 -1SR7 10.6 PRGR_HUMAN
25 PsiBlast_CBE 97.79100%-128 - C4 -3ZRB 6.2
27 PsiBlast_CBE 97.77100%-126 - C4 -3ZR7 7.3
29 PsiBlast_CBE 97.67100%-128 - C4 -3HQ5 9.5
1 PsiBlast_PDB 97.61100%-126 - C4 -1SQN 7.5 PRGR_HUMAN
7 PsiBlast_PDB 97.57100%-127 - C4 -4A2J 9.5 PRGR_HUMAN
4 PsiBlast_PDB 97.54100%-126 - C4 -3ZR7 7.2 PRGR_HUMAN
30 PsiBlast_CBE 97.40100%-124 - C4 -1A28 8.1
31 PsiBlast_CBE 97.38100%-125 - C4 -3D90 8.1
34 PsiBlast_CBE 97.34100%-126 - C4 -1SR7 10.0
35 PsiBlast_CBE 97.26100%-128 - C4 -3KBA 7.7
23 PsiBlast_CBE 97.07100%-126 - C4 -4APU 12.0
5 PsiBlast_PDB 96.93100%-126 - C4 -3ZRA 7.0 PRGR_HUMAN
32 PsiBlast_CBE 96.67100%-126 - C4 -1E3K 7.3
14 PsiBlast_PDB 96.61100%-121 - C4 -3D90 7.7 PRGR_HUMAN
21 PsiBlast_CBE 96.60100%-126 - C4 -1SQN 7.6
12 PsiBlast_PDB 96.32100%-131 - C4 -3HQ5 9.6 PRGR_HUMAN
10 PsiBlast_PDB 95.38100%-122 - C4 -2OVH 8.7
11 PsiBlast_PDB 94.95100%-124 - C4 -2OVM 8.1
19 PsiBlast_PDB 88.3467%-117 - C4 -4FN9 7.3 ?
20 PsiBlast_PDB 88.0765%-121 - C4 -2Q1H 8.3 ?
75 HHSearch 87.1655%-125 - C4 -3MNP 6.6
72 HHSearch 85.0253%-118 - C4 -1T7R 7.0
77 HHSearch 84.9555%-118 - C4 -3VHV 8.3
71 HHSearch 83.2952%-121 - C4 -3VHU 8.7