@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RARB_M: (2014-08-26 )
MSTSSHACPVPAVRGHMTHYPAAPYPLLFPPVIRGLSLPPLHGLHGHPPPSGCSTPSPASVGQACQRTTGGSQFAASTKWTPSLNAAIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNIAEHSPSVSPSSVENSGVSQSPLLQ

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




REA_B_5(3A9E)
RARA_HUMAN
[Raw transfer]




184_A_2(1FCX)
RARG_HUMAN
[Raw transfer]




REA_L_12(1XDK)
RARB_MOUSE
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




TTB_B_6(4DM6)
RARB_HUMAN
[Raw transfer]




REA_B_2(2LBD)
RARG_HUMAN
[Raw transfer]




394_A_2(1EXA)
RARG_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




REA_A_5(4DM8)
RARB_HUMAN
[Raw transfer]




REA_B_2(3LBD)
RARG_HUMAN
[Raw transfer]




254_A_2(1FD0)
RARG_HUMAN
[Raw transfer]




156_A_2(1FCZ)
RARG_HUMAN
[Raw transfer]




REA_B_6(4DM8)
RARB_HUMAN
[Raw transfer]




TTB_B_2(1XAP)
RARB_HUMAN
[Raw transfer]




EQO_A_10(3KMZ)
RARA_HUMAN
[Raw transfer]




961_B_2(4LBD)
RARG_HUMAN
[Raw transfer]




EQO_B_5(3KMZ)
RARA_HUMAN
[Raw transfer]




BMS_C_3(1DKF)
RARA_HUMAN
[Raw transfer]




961_A_2(1EXX)
RARG_HUMAN
[Raw transfer]




LUF_C_6(4DQM)
RARA_HUMAN
[Raw transfer]




CHAIN_H_8(1XDK)
RARB_MOUSE
[Raw transfer]

-

LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]




LMU_A_3(1FCZ)
RARG_HUMAN
[Raw transfer]




LMU_A_3(1FCY)
RARG_HUMAN
[Raw transfer]




LMU_A_3(1EXA)
RARG_HUMAN
[Raw transfer]




LMU_A_3(1FCX)
RARG_HUMAN
[Raw transfer]




LMU_A_3(1EXX)
RARG_HUMAN
[Raw transfer]




LMU_A_3(1FD0)
RARG_HUMAN
[Raw transfer]




CHAIN_C_2(3KMZ)
RARA_HUMAN
[Raw transfer]

-

CHAIN_D_4(4DM8)
RARB_HUMAN
[Raw transfer]

-

CHAIN_B_2(4DQM)
RARA_HUMAN
[Raw transfer]

-

CHAIN_F_4(4DM6)
RARB_HUMAN
[Raw transfer]

-

CHAIN_D_4(4DQM)
RARA_HUMAN
[Raw transfer]

-

CHAIN_B_2(1NQ7)
RORB_RAT
[Raw transfer]

-

CHAIN_X_2(1BSX)
THB_HUMAN
[Raw transfer]

-

23 PsiBlast_CBE 91.84100%-125 - C2 -4DM6 10.2 RARB_HUMAN
22 PsiBlast_CBE 90.69100%-123 - C2 -4DM8 8.5 RARB_HUMAN
3 PsiBlast_PDB 90.36100%-121 - C2 -4DM6 10.2 RARB_HUMAN
1 PsiBlast_PDB 90.28100%-116 - C2 -1XDK 8.8 RARB_MOUSE
21 PsiBlast_CBE 89.83100%-117 - C2 -1XDK 8.8 RARB_MOUSE
4 PsiBlast_PDB 89.79100%-122 - C2 -4DM8 8.5 RARB_HUMAN
5 PsiBlast_PDB 88.9187%-121 - C2 -3A9E 8.1 RARA_HUMAN
2 PsiBlast_PDB 87.90100%-123 - C2 -1XAP 10.2 RARB_HUMAN
14 PsiBlast_PDB 87.6486%-122 - C2 -4LBD 10.7 RARG_HUMAN
8 PsiBlast_PDB 87.5188%-128 - C2 -1DKF 10.5 RARA_HUMAN
43 HHSearch 86.9887%-125 - C2 -1FCY 10.7 RARG_HUMAN
11 PsiBlast_PDB 86.9286%-123 - C2 -1EXX 9.3 RARG_HUMAN
6 PsiBlast_PDB 86.8387%-124 - C2 -3KMR 9.8 RARA_HUMAN
13 PsiBlast_PDB 86.8286%-115 - C2 -3LBD 8.6 RARG_HUMAN
12 PsiBlast_PDB 86.3986%-118 - C2 -2LBD 8.7 RARG_HUMAN
16 PsiBlast_PDB 86.3488%-125 - C2 -1FCX 10.6 RARG_HUMAN
10 PsiBlast_PDB 86.3486%-122 - C2 -1EXA 9.7 RARG_HUMAN
17 PsiBlast_PDB 86.2488%-125 - C2 -1FCZ 10.0 RARG_HUMAN
18 PsiBlast_PDB 86.2188%-125 - C2 -1FD0 10.4 RARG_HUMAN
25 PsiBlast_CBE 85.7388%-124 - C2 -4DQM 5.8 RARA_HUMAN
9 PsiBlast_PDB 85.4488%-123 - C2 -4DQM 5.6 RARA_HUMAN
7 PsiBlast_PDB 81.0487%-118 - C2 -3KMZ 11.5 RARA_HUMAN
24 PsiBlast_CBE 80.4087%-118 - C2 -3KMZ 11.3 RARA_HUMAN
27 Fugue 72.9835%-105 - C2 -1BSX 4.2 THB_HUMAN
56 HHSearch 68.8332%-109 - C2 -1NQ7 6.0 RORB_RAT