@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RORA_H: (2014-08-26 )
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARRDELFGILQILHQCILSSGDAFVLTGVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG

Atome Classification :

(12 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C3S_B_2(1S0X)

[Raw transfer]



ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]



NBH_A_5(4NIE)
RORG_HUMAN
[Raw transfer]



ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]



CLR_B_2(1N83)

[Raw transfer]



REA_C_3(1N4H)
RORB_RAT
[Raw transfer]



HC3_A_5(3L0L)
RORG_HUMAN
[Raw transfer]



HC3_A_5(3L0L)
RORG_HUMAN
[Raw transfer]



HC2_A_3(3KYT)

[Raw transfer]



HC9_A_3(3L0J)

[Raw transfer]



DGX_A_3(3B0W)
RORG_HUMAN
[Raw transfer]



STE_C_3(1K4W)
RORB_RAT
[Raw transfer]



444_A_3(4NB6)
RORG_HUMAN
[Raw transfer]



LMU_A_3(1FCY)
RARG_HUMAN
[Raw transfer]



CHAIN_B_2(1NQ7)
RORB_RAT
[Raw transfer]
-
CHAIN_C_2(3L0L)
RORG_HUMAN
[Raw transfer]
-
CHAIN_D_4(4NQA)
?
[Raw transfer]
-
CHAIN_X_2(1BSX)
THB_HUMAN
[Raw transfer]
-
1 PsiBlast_PDB 95.63100%-139 - C3 -1N83 8.9
2 PsiBlast_PDB 95.07100%-139 - C3 -1S0X 10.2
36 HHSearch 84.1363%-132 - C3 -1NQ7 8.3 RORB_RAT
6 PsiBlast_PDB 84.1153%-128 - C3 -4NIE 7.6 RORG_HUMAN
35 HHSearch 83.9053%-123 - C3 -3L0L 7.9 RORG_HUMAN
3 PsiBlast_PDB 83.2462%-132 - C3 -1K4W 2.6 RORB_RAT
4 PsiBlast_PDB 82.7861%-130 - C3 -1N4H 6.5 RORB_RAT
10 PsiBlast_PDB 82.5253%-128 - C3 -3L0J 8.1
9 PsiBlast_PDB 82.2053%-130 - C3 -3KYT 7.9
7 PsiBlast_PDB 75.1352%-117 - C3 -4NB6 4.6 RORG_HUMAN
11 PsiBlast_PDB 74.2053%-123 - C3 -3B0W 8.0 RORG_HUMAN
22 Fugue 71.0231%-112 - C3 -1BSX 2.7 THB_HUMAN