@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RXRB_H: (2014-08-26 )
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




5TN_A_3(2P1V)
RXRA_HUMAN
[Raw transfer]




4TN_A_3(2P1U)
RXRA_HUMAN
[Raw transfer]




21P_C_6(2ZY0)
RXRA_HUMAN
[Raw transfer]




BM6_J_10(1MZN)
RXRA_HUMAN
[Raw transfer]




BM6_K_11(1MZN)
RXRA_HUMAN
[Raw transfer]




BM6_L_12(1MZN)
RXRA_HUMAN
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




2E3_A_3(3FUG)
RXRA_HUMAN
[Raw transfer]




P26_A_3(2ZXZ)
RXRA_HUMAN
[Raw transfer]




BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




21P_A_5(2ZY0)
RXRA_HUMAN
[Raw transfer]




REA_D_4(1FBY)
RXRA_HUMAN
[Raw transfer]




L79_E_5(1RDT)
RXRA_HUMAN
[Raw transfer]




LG2_A_5(1H9U)
RXRB_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




LG2_C_11(1H9U)
RXRB_HUMAN
[Raw transfer]




LG2_D_13(1H9U)

[Raw transfer]




LG2_B_8(1H9U)
RXRB_HUMAN
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




MEI_F_6(1UHL)

[Raw transfer]




REA_C_7(3FC6)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




EPH_A_2(1G2N)
?
[Raw transfer]




MLO_A_5(3R5M)
RXRA_HUMAN
[Raw transfer]




MLO_C_6(3R5M)
RXRA_HUMAN
[Raw transfer]




BGV_C_6(3OZJ)
RXRA_HUMAN
[Raw transfer]




BGV_A_5(3OZJ)
RXRA_HUMAN
[Raw transfer]




RHN_A_7(3R2A)
RXRA_HUMAN
[Raw transfer]




RHN_C_8(3R2A)
RXRA_HUMAN
[Raw transfer]




2 PsiBlast_PDB 89.2673%-120 - C5 -3E00 7.8 RXRA_HUMAN
1 PsiBlast_PDB 88.9873%-121 - C5 -3DZU 7.2 RXRA_HUMAN
5 PsiBlast_CBE 81.27100%-138 - C5 -1UHL 5.9
25 PsiBlast_CBE 78.8586%-129 - C5 -2ZY0 9.1 RXRA_HUMAN
39 PsiBlast_CBE 78.6487%-136 - C5 -3OZJ 2.7 RXRA_HUMAN
15 PsiBlast_CBE 78.5986%-134 - C5 -3R5M 6.6 RXRA_HUMAN
35 PsiBlast_CBE 78.5686%-132 - C5 -1MVC 10.2 RXRA_HUMAN
10 PsiBlast_CBE 78.4887%-131 - C5 -3UVV 8.0 RXRA_HUMAN
58 HHSearch 78.3988%-136 - C5 -2P1T 9.7 RXRA_HUMAN
36 PsiBlast_CBE 78.3386%-130 - C5 -1MV9 8.8 RXRA_HUMAN
26 PsiBlast_CBE 78.2786%-128 - C5 -2ZY0 9.1 RXRA_HUMAN
34 PsiBlast_CBE 78.2686%-122 - C5 -1MZN 9.8 RXRA_HUMAN
32 PsiBlast_CBE 78.2686%-125 - C5 -1MZN 9.9 RXRA_HUMAN
28 PsiBlast_CBE 78.1786%-132 - C5 -2P1V 10.3 RXRA_HUMAN
33 PsiBlast_CBE 78.0286%-131 - C5 -1MZN 9.8 RXRA_HUMAN
31 PsiBlast_CBE 77.9686%-130 - C5 -1MZN 9.8 RXRA_HUMAN
16 PsiBlast_CBE 77.9486%-129 - C5 -3R5M 7.2 RXRA_HUMAN
29 PsiBlast_CBE 77.9086%-136 - C5 -2P1U 10.0 RXRA_HUMAN
40 PsiBlast_CBE 77.8087%-130 - C5 -3OZJ 4.0 RXRA_HUMAN
27 PsiBlast_CBE 77.7886%-134 - C5 -2ZXZ 9.3 RXRA_HUMAN
24 PsiBlast_CBE 77.6086%-133 - C5 -3FUG 9.7 RXRA_HUMAN
14 PsiBlast_CBE 77.5886%-134 - C5 -3E94 5.8 RXRA_HUMAN
12 PsiBlast_CBE 77.2687%-131 - C5 -1RDT 9.8 RXRA_HUMAN
9 PsiBlast_CBE 77.13100%-142 - C5 -1H9U 9.7 RXRB_HUMAN
38 PsiBlast_CBE 77.0787%-121 - C5 -1FBY 8.0 RXRA_HUMAN
13 PsiBlast_CBE 77.0486%-136 - C5 -3KWY 7.5 RXRA_HUMAN
6 PsiBlast_CBE 76.85100%-138 - C5 -1H9U 9.6
7 PsiBlast_CBE 76.36100%-140 - C5 -1H9U 9.5 RXRB_HUMAN
8 PsiBlast_CBE 76.34100%-139 - C5 -1H9U 9.8 RXRB_HUMAN
37 PsiBlast_CBE 75.9887%-123 - C5 -1FBY 8.1 RXRA_HUMAN
11 PsiBlast_CBE 73.3287%-119 - C5 -3FC6 7.6 RXRA_HUMAN
20 PsiBlast_CBE 71.8286%-118 - C5 -3R2A 3.7 RXRA_HUMAN
18 PsiBlast_CBE 70.7986%-124 - C5 -3R2A 3.8 RXRA_HUMAN
62 HHSearch 67.8148%-112 - C5 -1G2N 9.0 ?