@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RXRB_M: (2014-08-26 )
MSWATRPPFLPPRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAGEQQALEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLSQGIRPSSPPGPPLTPSAPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

4TN_A_3(2P1U)
RXRA_HUMAN
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




BM6_K_11(1MZN)
RXRA_HUMAN
[Raw transfer]




5TN_A_3(2P1V)
RXRA_HUMAN
[Raw transfer]




P26_A_3(2ZXZ)
RXRA_HUMAN
[Raw transfer]




2E3_A_3(3FUG)
RXRA_HUMAN
[Raw transfer]




21P_A_5(2ZY0)
RXRA_HUMAN
[Raw transfer]




BM6_L_12(1MZN)
RXRA_HUMAN
[Raw transfer]




21P_C_6(2ZY0)
RXRA_HUMAN
[Raw transfer]




BM6_J_10(1MZN)
RXRA_HUMAN
[Raw transfer]




L79_E_5(1RDT)
RXRA_HUMAN
[Raw transfer]




LG2_A_5(1H9U)
RXRB_HUMAN
[Raw transfer]




REA_D_4(1FBY)
RXRA_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




LG2_C_11(1H9U)
RXRB_HUMAN
[Raw transfer]




LG2_B_8(1H9U)
RXRB_HUMAN
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




LG2_D_13(1H9U)

[Raw transfer]




REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




MEI_F_6(1UHL)

[Raw transfer]




REA_C_7(3FC6)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




EPH_A_2(1G2N)
?
[Raw transfer]




MLO_C_6(3R5M)
RXRA_HUMAN
[Raw transfer]




MLO_A_5(3R5M)
RXRA_HUMAN
[Raw transfer]




BGV_C_6(3OZJ)
RXRA_HUMAN
[Raw transfer]




BGV_A_5(3OZJ)
RXRA_HUMAN
[Raw transfer]




RHN_A_7(3R2A)
RXRA_HUMAN
[Raw transfer]




RHN_C_8(3R2A)
RXRA_HUMAN
[Raw transfer]




1 PsiBlast_PDB 92.8977%-121 - C4 -3DZU 7.2 RXRA_HUMAN
2 PsiBlast_PDB 91.0177%-120 - C4 -3E00 7.8 RXRA_HUMAN
5 PsiBlast_CBE 80.8998%-138 - C4 -1UHL 5.9
35 PsiBlast_CBE 78.6986%-131 - C4 -1MVC 10.2 RXRA_HUMAN
36 PsiBlast_CBE 78.6386%-130 - C4 -1MV9 8.8 RXRA_HUMAN
39 PsiBlast_CBE 78.3287%-135 - C4 -3OZJ 2.7 RXRA_HUMAN
58 HHSearch 78.2688%-136 - C4 -2P1T 9.7 RXRA_HUMAN
31 PsiBlast_CBE 78.2186%-130 - C4 -1MZN 9.8 RXRA_HUMAN
28 PsiBlast_CBE 78.1286%-132 - C4 -2P1V 10.3 RXRA_HUMAN
33 PsiBlast_CBE 78.0386%-131 - C4 -1MZN 9.8 RXRA_HUMAN
24 PsiBlast_CBE 77.9386%-132 - C4 -3FUG 9.7 RXRA_HUMAN
12 PsiBlast_CBE 77.8987%-130 - C4 -1RDT 9.8 RXRA_HUMAN
29 PsiBlast_CBE 77.8086%-136 - C4 -2P1U 10.0 RXRA_HUMAN
40 PsiBlast_CBE 77.7987%-130 - C4 -3OZJ 4.0 RXRA_HUMAN
14 PsiBlast_CBE 77.7786%-134 - C4 -3E94 5.8 RXRA_HUMAN
15 PsiBlast_CBE 77.7586%-134 - C4 -3R5M 6.6 RXRA_HUMAN
25 PsiBlast_CBE 77.6986%-128 - C4 -2ZY0 9.1 RXRA_HUMAN
26 PsiBlast_CBE 77.4486%-128 - C4 -2ZY0 9.1 RXRA_HUMAN
13 PsiBlast_CBE 77.3586%-136 - C4 -3KWY 7.5 RXRA_HUMAN
27 PsiBlast_CBE 77.3386%-134 - C4 -2ZXZ 9.3 RXRA_HUMAN
34 PsiBlast_CBE 77.1986%-122 - C4 -1MZN 9.8 RXRA_HUMAN
16 PsiBlast_CBE 77.0886%-129 - C4 -3R5M 7.2 RXRA_HUMAN
10 PsiBlast_CBE 77.0687%-130 - C4 -3UVV 8.0 RXRA_HUMAN
32 PsiBlast_CBE 77.0186%-125 - C4 -1MZN 9.9 RXRA_HUMAN
38 PsiBlast_CBE 76.7587%-120 - C4 -1FBY 8.0 RXRA_HUMAN
9 PsiBlast_CBE 75.6598%-141 - C4 -1H9U 9.7 RXRB_HUMAN
37 PsiBlast_CBE 75.5087%-123 - C4 -1FBY 8.1 RXRA_HUMAN
6 PsiBlast_CBE 75.2098%-138 - C4 -1H9U 9.6
8 PsiBlast_CBE 74.9298%-139 - C4 -1H9U 9.8 RXRB_HUMAN
7 PsiBlast_CBE 74.8698%-139 - C4 -1H9U 9.5 RXRB_HUMAN
11 PsiBlast_CBE 73.9887%-119 - C4 -3FC6 7.6 RXRA_HUMAN
20 PsiBlast_CBE 73.1386%-117 - C4 -3R2A 3.7 RXRA_HUMAN
18 PsiBlast_CBE 72.0586%-124 - C4 -3R2A 3.8 RXRA_HUMAN
62 HHSearch 68.7247%-111 - C4 -1G2N 9.0 ?