@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RXRB_R: (2014-08-26 )
GEAGRDGMGDTGRDSRSPDSSSPNPLSQGIPPSSPPGPPHTPSAPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




5TN_A_3(2P1V)
RXRA_HUMAN
[Raw transfer]




BM6_K_11(1MZN)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




4TN_A_3(2P1U)
RXRA_HUMAN
[Raw transfer]




BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




21P_A_5(2ZY0)
RXRA_HUMAN
[Raw transfer]




L79_E_5(1RDT)
RXRA_HUMAN
[Raw transfer]




BM6_L_12(1MZN)
RXRA_HUMAN
[Raw transfer]




21P_C_6(2ZY0)
RXRA_HUMAN
[Raw transfer]




P26_A_3(2ZXZ)
RXRA_HUMAN
[Raw transfer]




2E3_A_3(3FUG)
RXRA_HUMAN
[Raw transfer]




BM6_J_10(1MZN)
RXRA_HUMAN
[Raw transfer]




LG2_A_5(1H9U)
RXRB_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




REA_D_4(1FBY)
RXRA_HUMAN
[Raw transfer]




LG2_C_11(1H9U)
RXRB_HUMAN
[Raw transfer]




LG2_B_8(1H9U)
RXRB_HUMAN
[Raw transfer]




REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




MEI_F_6(1UHL)

[Raw transfer]




LG2_D_13(1H9U)

[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




REA_C_7(3FC6)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




MLO_A_5(3R5M)
RXRA_HUMAN
[Raw transfer]




EPH_A_2(1G2N)
?
[Raw transfer]




MLO_C_6(3R5M)
RXRA_HUMAN
[Raw transfer]




BGV_C_6(3OZJ)
RXRA_HUMAN
[Raw transfer]




BGV_A_5(3OZJ)
RXRA_HUMAN
[Raw transfer]




RHN_A_7(3R2A)
RXRA_HUMAN
[Raw transfer]




RHN_C_8(3R2A)
RXRA_HUMAN
[Raw transfer]




1 PsiBlast_PDB 91.2472%-122 - C2 -3DZU 7.2 RXRA_HUMAN
2 PsiBlast_PDB 89.4472%-122 - C2 -3E00 7.8 RXRA_HUMAN
5 PsiBlast_CBE 80.1498%-140 - C2 -1UHL 5.9
33 PsiBlast_CBE 78.3987%-134 - C2 -1MVC 10.2 RXRA_HUMAN
34 PsiBlast_CBE 78.2787%-132 - C2 -1MV9 8.8 RXRA_HUMAN
39 PsiBlast_CBE 78.1387%-138 - C2 -3OZJ 2.7 RXRA_HUMAN
58 HHSearch 77.8688%-138 - C2 -2P1T 9.7 RXRA_HUMAN
29 PsiBlast_CBE 77.8387%-132 - C2 -1MZN 9.8 RXRA_HUMAN
26 PsiBlast_CBE 77.7487%-134 - C2 -2P1V 10.3 RXRA_HUMAN
31 PsiBlast_CBE 77.6887%-133 - C2 -1MZN 9.8 RXRA_HUMAN
22 PsiBlast_CBE 77.6087%-135 - C2 -3FUG 9.7 RXRA_HUMAN
27 PsiBlast_CBE 77.5087%-139 - C2 -2P1U 10.0 RXRA_HUMAN
13 PsiBlast_CBE 77.4687%-136 - C2 -3R5M 6.6 RXRA_HUMAN
36 PsiBlast_CBE 77.4087%-136 - C2 -3E94 5.8 RXRA_HUMAN
23 PsiBlast_CBE 77.3587%-130 - C2 -2ZY0 9.1 RXRA_HUMAN
40 PsiBlast_CBE 77.3387%-132 - C2 -3OZJ 4.0 RXRA_HUMAN
12 PsiBlast_CBE 77.3187%-133 - C2 -1RDT 9.8 RXRA_HUMAN
35 PsiBlast_CBE 77.1287%-138 - C2 -3KWY 7.5 RXRA_HUMAN
24 PsiBlast_CBE 77.1187%-130 - C2 -2ZY0 9.1 RXRA_HUMAN
25 PsiBlast_CBE 76.8587%-136 - C2 -2ZXZ 9.3 RXRA_HUMAN
14 PsiBlast_CBE 76.7187%-131 - C2 -3R5M 7.2 RXRA_HUMAN
10 PsiBlast_CBE 76.3487%-132 - C2 -3UVV 8.0 RXRA_HUMAN
38 PsiBlast_CBE 75.7087%-123 - C2 -1FBY 8.0 RXRA_HUMAN
32 PsiBlast_CBE 75.4487%-125 - C2 -1MZN 9.8 RXRA_HUMAN
30 PsiBlast_CBE 75.3287%-127 - C2 -1MZN 9.9 RXRA_HUMAN
9 PsiBlast_CBE 75.2498%-144 - C2 -1H9U 9.7 RXRB_HUMAN
6 PsiBlast_CBE 74.6798%-140 - C2 -1H9U 9.6
37 PsiBlast_CBE 74.4387%-125 - C2 -1FBY 8.1 RXRA_HUMAN
8 PsiBlast_CBE 74.3898%-141 - C2 -1H9U 9.8 RXRB_HUMAN
7 PsiBlast_CBE 74.2498%-142 - C2 -1H9U 9.5 RXRB_HUMAN
11 PsiBlast_CBE 72.6587%-121 - C2 -3FC6 7.6 RXRA_HUMAN
18 PsiBlast_CBE 71.9387%-120 - C2 -3R2A 3.7 RXRA_HUMAN
16 PsiBlast_CBE 70.8987%-126 - C2 -3R2A 3.8 RXRA_HUMAN
62 HHSearch 68.3847%-112 - C2 -1G2N 8.9 ?