@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RXRG_R: (2014-08-26 )
MYGNYSHFMKFPTGFGGSPGHTGSTSMSPSVALPTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILEAELAVEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




5TN_A_3(2P1V)
RXRA_HUMAN
[Raw transfer]




HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




4TN_A_3(2P1U)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




21P_A_5(2ZY0)
RXRA_HUMAN
[Raw transfer]




BM6_K_11(1MZN)
RXRA_HUMAN
[Raw transfer]




P26_A_3(2ZXZ)
RXRA_HUMAN
[Raw transfer]




2E3_A_3(3FUG)
RXRA_HUMAN
[Raw transfer]




BM6_L_12(1MZN)
RXRA_HUMAN
[Raw transfer]




21P_C_6(2ZY0)
RXRA_HUMAN
[Raw transfer]




BM6_J_10(1MZN)
RXRA_HUMAN
[Raw transfer]




REA_J_10(1FM6)
RXRA_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




REA_F_6(1FM9)
RXRA_HUMAN
[Raw transfer]




REA_I_9(1FM6)
RXRA_HUMAN
[Raw transfer]




REA_D_4(1FBY)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




REA_E_5(1K74)
RXRA_HUMAN
[Raw transfer]




REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




MLO_C_6(3R5M)
RXRA_HUMAN
[Raw transfer]




MLO_A_5(3R5M)
RXRA_HUMAN
[Raw transfer]




EPH_A_2(1G2N)
?
[Raw transfer]




BGV_C_6(3OZJ)
RXRA_HUMAN
[Raw transfer]




BGV_A_5(3OZJ)
RXRA_HUMAN
[Raw transfer]




REA_F_6(1G5Y)
RXRA_HUMAN
[Raw transfer]




REA_E_5(1G5Y)
RXRA_HUMAN
[Raw transfer]




RHN_A_7(3R2A)
RXRA_HUMAN
[Raw transfer]




RHN_C_8(3R2A)
RXRA_HUMAN
[Raw transfer]




2 PsiBlast_PDB 92.5471%-120 - C4 -3E00 7.8 RXRA_HUMAN
1 PsiBlast_PDB 91.1371%-120 - C4 -3DZU 7.2 RXRA_HUMAN
26 PsiBlast_CBE 82.1885%-120 - C4 -1MZN 9.8 RXRA_HUMAN
24 PsiBlast_CBE 81.7585%-122 - C4 -1MZN 9.9 RXRA_HUMAN
41 PsiBlast_CBE 81.2585%-115 - C4 -1FM9 8.6 RXRA_HUMAN
38 PsiBlast_CBE 81.2085%-114 - C4 -1K74 7.9 RXRA_HUMAN
32 PsiBlast_CBE 80.5685%-127 - C4 -3OZJ 2.7 RXRA_HUMAN
18 PsiBlast_CBE 80.5085%-122 - C4 -2ZY0 9.1 RXRA_HUMAN
43 PsiBlast_CBE 80.4085%-115 - C4 -1FM6 8.0 RXRA_HUMAN
27 PsiBlast_CBE 80.3785%-124 - C4 -1MVC 10.2 RXRA_HUMAN
17 PsiBlast_CBE 80.2785%-122 - C4 -2ZY0 9.1 RXRA_HUMAN
25 PsiBlast_CBE 80.2185%-123 - C4 -1MZN 9.8 RXRA_HUMAN
16 PsiBlast_CBE 80.2085%-124 - C4 -3FUG 9.7 RXRA_HUMAN
42 PsiBlast_CBE 80.1485%-116 - C4 -1FM6 8.5 RXRA_HUMAN
28 PsiBlast_CBE 80.1185%-122 - C4 -1MV9 8.8 RXRA_HUMAN
7 PsiBlast_CBE 80.0585%-127 - C4 -3R5M 6.6 RXRA_HUMAN
20 PsiBlast_CBE 79.9485%-124 - C4 -2P1V 10.2 RXRA_HUMAN
8 PsiBlast_CBE 79.9085%-120 - C4 -3R5M 7.2 RXRA_HUMAN
59 HHSearch 79.7686%-127 - C4 -2P1T 9.7 RXRA_HUMAN
21 PsiBlast_CBE 79.7585%-129 - C4 -2P1U 10.0 RXRA_HUMAN
23 PsiBlast_CBE 79.7185%-122 - C4 -1MZN 9.8 RXRA_HUMAN
33 PsiBlast_CBE 79.4885%-124 - C4 -3OZJ 4.0 RXRA_HUMAN
31 PsiBlast_CBE 79.4385%-123 - C4 -3UVV 8.0 RXRA_HUMAN
6 PsiBlast_CBE 79.1485%-127 - C4 -3E94 5.8 RXRA_HUMAN
5 PsiBlast_CBE 78.8785%-127 - C4 -3KWY 7.5 RXRA_HUMAN
19 PsiBlast_CBE 78.8085%-125 - C4 -2ZXZ 9.3 RXRA_HUMAN
29 PsiBlast_CBE 77.5985%-115 - C4 -1FBY 8.1 RXRA_HUMAN
30 PsiBlast_CBE 77.4085%-112 - C4 -1FBY 8.0 RXRA_HUMAN
39 PsiBlast_CBE 76.8985%-118 - C4 -1G5Y 6.3 RXRA_HUMAN
40 PsiBlast_CBE 74.5085%-112 - C4 -1G5Y 6.5 RXRA_HUMAN
12 PsiBlast_CBE 73.0585%-110 - C4 -3R2A 3.7 RXRA_HUMAN
10 PsiBlast_CBE 71.8885%-113 - C4 -3R2A 3.8 RXRA_HUMAN
63 HHSearch 70.8646%-110 - C4 -1G2N 8.6 ?