@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_VDR_CH: (2014-08-26 )
MSELRGSWDEQQQSMAYLPDADMDTVAASTSLPDPAGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFNGDCKITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKESLKPKLSEEQQKVIDTLLEAHHKTFDTTYSDFNKFRPPVRSKFSSRMATHSSSVVSQDFSSEDSNDVFGSDAFAAFPEPMEPQMFSNLDLSEESDESPSMNIELPHLPMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEVIMLRSNQSFTMEDMSWTCGSNDFKYKVSDVTQAGHSMDLLEPLVKFQVGLKKLNLHEEEHVLLMAICILSPDRPGVQDTSLVESIQDRLSDILQTYIRCRHPPPGSRLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPEHSMQLTPLVLEVFGNEIS

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




TFY_A_2(4ITF)
?
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




TEY_A_2(4ITE)
?
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




NACID_C_1(1KB6)
VDR_HUMAN
[Raw transfer]

-

NACID_C_1(1KB2)
VDR_HUMAN
[Raw transfer]

-

NACID_C_1(1KB4)
VDR_HUMAN
[Raw transfer]

-

NACID_C_1(1KB6)
VDR_HUMAN
[Raw transfer]

-

NACID_C_1(1KB2)
VDR_HUMAN
[Raw transfer]

-

NACID_C_1(1KB4)
VDR_HUMAN
[Raw transfer]

-

42 HHSearch 89.6870%-117 - C1 -2HC4 10.7 VDRA_DANRE
44 HHSearch 86.7982%-112 - C1 -3B0T 10.8 VDR_HUMAN
45 HHSearch 85.9380%-115 - C1 -2O4J 11.2 VDR_RAT
12 PsiBlast_PDB 84.3569%-109 - C1 -3A40 11.6 VDR_HUMAN
11 PsiBlast_PDB 84.0769%-108 - C1 -3A3Z 11.6 VDR_HUMAN
8 PsiBlast_PDB 84.0069%-108 - C1 -2HB8 11.2 VDR_HUMAN
3 PsiBlast_PDB 83.4569%-112 - C1 -1TXI 10.2 VDR_HUMAN
20 PsiBlast_PDB 83.3568%-106 - C1 -3P8X 11.1 VDR_HUMAN
7 PsiBlast_PDB 83.2969%-107 - C1 -2HB7 12.1 VDR_HUMAN
10 PsiBlast_PDB 83.2869%-107 - C1 -3CS6 11.0 VDR_HUMAN
5 PsiBlast_PDB 83.1269%-109 - C1 -2HAR 12.2 VDR_HUMAN
2 PsiBlast_PDB 83.1069%-111 - C1 -1S19 10.5 VDR_HUMAN
9 PsiBlast_PDB 83.0669%-107 - C1 -3CS4 11.2 VDR_HUMAN
1 PsiBlast_PDB 83.0069%-110 - C1 -1S0Z 11.4 VDR_HUMAN
16 PsiBlast_PDB 82.8869%-110 - C1 -3AX8 11.0 VDR_HUMAN
15 PsiBlast_PDB 82.8769%-111 - C1 -3AUR 10.8 VDR_HUMAN
6 PsiBlast_PDB 82.7469%-107 - C1 -2HAS 11.9 VDR_HUMAN
4 PsiBlast_PDB 82.6369%-107 - C1 -2HAM 11.9 VDR_HUMAN
13 PsiBlast_PDB 82.5469%-108 - C1 -3A78 10.8 VDR_HUMAN
14 PsiBlast_PDB 82.4869%-110 - C1 -3AUQ 10.9 VDR_HUMAN
19 PsiBlast_PDB 82.3069%-110 - C1 -4ITF 13.0 ?
17 PsiBlast_PDB 82.2969%-107 - C1 -3VHW 12.9 VDR_HUMAN
18 PsiBlast_PDB 82.1769%-113 - C1 -4ITE 12.6 ?
21 PsiBlast_CBE 43.8896%-105 - C1 -1KB6 5.5 VDR_HUMAN
23 PsiBlast_CBE 43.0696% -98 - C1 -1KB4 5.5 VDR_HUMAN
24 PsiBlast_CBE 41.1796% -99 - C1 -1KB4 5.7 VDR_HUMAN
22 PsiBlast_CBE 40.6196% -99 - C1 -1KB6 5.6 VDR_HUMAN
26 PsiBlast_CBE 40.3296%-103 - C1 -1KB2 6.0 VDR_HUMAN
25 PsiBlast_CBE 38.2696% -92 - C1 -1KB2 5.0 VDR_HUMAN