@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_VDR_RA: (2014-08-26 )
MEATAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIMKRKEEEALKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSYSPRPTLSFSGNSSSSSSDLYTTSLDMMEPSGFSNLDLNGEDSDDPSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEIS

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




TFY_A_2(4ITF)
?
[Raw transfer]




VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
VDR_HUMAN
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




TEY_A_2(4ITE)
?
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




74 HHSearch 90.3399%-115 - C5 -2O4J 11.6 VDR_RAT
73 HHSearch 89.2490%-110 - C5 -3B0T 11.1 VDR_HUMAN
8 PsiBlast_PDB 88.8184%-114 - C5 -3VJS 8.8 VDR_RAT
6 PsiBlast_PDB 88.7584%-120 - C5 -2ZL9 11.6 VDR_RAT
9 PsiBlast_PDB 88.4184%-117 - C5 -3VJT 8.7 VDR_RAT
2 PsiBlast_PDB 87.9184%-121 - C5 -1RK3 11.2 VDR_RAT
7 PsiBlast_PDB 87.5684%-116 - C5 -2ZLA 11.7 VDR_RAT
5 PsiBlast_PDB 87.3984%-115 - C5 -3A2H 10.5 VDR_RAT
30 PsiBlast_CBE 87.3876%-109 - C5 -3A40 11.8 VDR_HUMAN
71 HHSearch 87.3268%-113 * C5 *2HC4 10.9 VDRA_DANRE
10 PsiBlast_PDB 87.1984%-118 - C5 -3VRU 10.3 VDR_RAT
4 PsiBlast_PDB 87.1384%-113 - C5 -2O4R 11.2 VDR_RAT
31 PsiBlast_CBE 87.1176%-110 - C5 -3A3Z 11.9 VDR_HUMAN
39 PsiBlast_CBE 86.9476%-108 - C5 -3P8X 11.3 VDR_HUMAN
33 PsiBlast_CBE 86.7876%-110 - C5 -2HB7 12.4 VDR_HUMAN
15 PsiBlast_PDB 86.7876%-108 - C5 -1IE9 11.2 VDR_HUMAN
28 PsiBlast_CBE 86.6676%-112 - C5 -3AUQ 11.2 VDR_HUMAN
12 PsiBlast_PDB 86.6284%-122 - C5 -3VRW 11.8 VDR_RAT
24 PsiBlast_CBE 86.6076%-109 - C5 -3CS6 11.3 VDR_HUMAN
32 PsiBlast_CBE 86.4776%-109 - C5 -2HB8 11.5 VDR_HUMAN
11 PsiBlast_PDB 86.4784%-120 - C5 -3VRV 11.4 VDR_RAT
17 PsiBlast_PDB 86.4676%-111 - C5 -3KPZ 10.6 VDR_HUMAN
27 PsiBlast_CBE 86.4076%-111 - C5 -3AUR 11.1 VDR_HUMAN
1 PsiBlast_PDB 86.2484%-113 - C5 -1RJK 11.5 VDR_RAT
19 PsiBlast_PDB 86.1976%-114 - C5 -4G2I 11.8 VDR_HUMAN
41 PsiBlast_CBE 86.1676%-110 - C5 -3A2J 10.5 VDR_HUMAN
37 PsiBlast_CBE 86.1576%-112 - C5 -1TXI 10.4 VDR_HUMAN
49 PsiBlast_CBE 86.1276%-110 - C5 -3M7R 9.5 VDR_HUMAN
25 PsiBlast_CBE 86.0876%-109 - C5 -3CS4 11.6 VDR_HUMAN
44 PsiBlast_CBE 86.0376%-116 - C5 -3W0C 12.7 VDR_HUMAN
43 PsiBlast_CBE 86.0276%-115 - C5 -3W0Y 13.5 VDR_HUMAN
18 PsiBlast_PDB 85.9976%-108 - C5 -3TKC 11.7 VDR_HUMAN
16 PsiBlast_PDB 85.8876%-108 - C5 -3OGT 11.6 VDR_HUMAN
40 PsiBlast_CBE 85.7876%-112 - C5 -3A2I 10.6 VDR_HUMAN
38 PsiBlast_CBE 85.7876%-112 - C5 -1S19 10.8 VDR_HUMAN
29 PsiBlast_CBE 85.7776%-109 - C5 -3A78 10.8 VDR_HUMAN
45 PsiBlast_CBE 85.6676%-116 - C5 -3W0A 12.4 VDR_HUMAN
13 PsiBlast_PDB 85.6676%-114 - C5 -1DB1 10.9 VDR_HUMAN
22 PsiBlast_CBE 85.6576%-113 - C5 -4ITE 12.9 ?
20 PsiBlast_PDB 85.6176%-112 - C5 -1S0Z 11.4 VDR_HUMAN
26 PsiBlast_CBE 85.5776%-110 - C5 -3AX8 11.3 VDR_HUMAN
47 PsiBlast_CBE 85.5676%-117 - C5 -3AZ2 11.3 VDR_HUMAN
35 PsiBlast_CBE 85.5276%-111 - C5 -2HAR 12.4 VDR_HUMAN
48 PsiBlast_CBE 85.4776%-115 - C5 -3AZ1 10.0 VDR_HUMAN
21 PsiBlast_CBE 85.3876%-110 - C5 -4ITF 13.2 ?
14 PsiBlast_PDB 85.3776%-113 - C5 -1IE8 11.2 VDR_HUMAN
36 PsiBlast_CBE 85.2776%-108 - C5 -2HAM 12.2 VDR_HUMAN
46 PsiBlast_CBE 85.2176%-115 - C5 -3AZ3 12.5 VDR_HUMAN
23 PsiBlast_CBE 84.8676%-107 - C5 -3VHW 13.1 VDR_HUMAN
34 PsiBlast_CBE 84.8076%-109 - C5 -2HAS 12.1 VDR_HUMAN