@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00144_AMPC_C: (2014-08-29 )
MMKKSICCALLLTASFSTFAAAKTEQQIADIVNRTITPLMQEQAIPGMAVAIIYEGKPYYFTWGKADIANNHPVTQQTLFELGSVSKTFNGVLGGDRIARGEIKLSDPVTKYWPELTGKQWRGISLLHLATYTAGGLPLQIPGDVTDKAELLRFYQNWQPQWTPGAKRLYANSSIGLFGALAVKSSGMSYEEAMTRRVLQPLKLAHTWITVPQSEQKNYAWGYLEGKPVHVSPGQLDAEAYGVKSSVIDMARWVQANMDASHVQEKTLQQGIELAQSRYWRIGDMYQGLGWEMLNWPLKADSIINGSDSKVALAALPAVEVNPPAPAVKASWVHKTGSTGGFGSYVAFVPEKNLGIVMLANKSYPNPARVEAAWRILEKLQ

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0NA_B_6(4E3K)
AMPC_ECOLI
[Raw transfer]




0NA_A_3(4E3K)
AMPC_ECOLI
[Raw transfer]




0N3_A_3(4E3I)
AMPC_ECOLI
[Raw transfer]




0N4_B_5(4E3J)
AMPC_ECOLI
[Raw transfer]




0NB_A_3(4E3L)
AMPC_ECOLI
[Raw transfer]




0N3_B_7(4E3I)
AMPC_ECOLI
[Raw transfer]




0ND_A_3(4E3M)
AMPC_ECOLI
[Raw transfer]




0N4_A_3(4E3J)
AMPC_ECOLI
[Raw transfer]




AZR_A_3(1FR6)
?
[Raw transfer]




PTX_A_2(1RGY)
AMPC_CITFR
[Raw transfer]




0NE_B_5(4E3N)
AMPC_ECOLI
[Raw transfer]




SM3_B_7(1PI4)
AMPC_ECOLI
[Raw transfer]




BSF_B_5(3O86)
AMPC_ECOLI
[Raw transfer]




0NE_A_3(4E3N)
AMPC_ECOLI
[Raw transfer]




BSH_A_3(3O88)
AMPC_ECOLI
[Raw transfer]




0NG_B_6(4E3O)
AMPC_ECOLI
[Raw transfer]




AZR_B_4(1FR6)
?
[Raw transfer]




BSG_A_3(3O87)
AMPC_ECOLI
[Raw transfer]




SM2_A_6(1PI5)
AMPC_ECOLI
[Raw transfer]




BSG_B_5(3O87)
AMPC_ECOLI
[Raw transfer]




BSF_A_3(3O86)
AMPC_ECOLI
[Raw transfer]




0NG_A_3(4E3O)
AMPC_ECOLI
[Raw transfer]




BSH_B_5(3O88)
AMPC_ECOLI
[Raw transfer]




C9P_B_4(3BM6)
AMPC_ECOLI
[Raw transfer]




SM3_A_6(1PI4)
AMPC_ECOLI
[Raw transfer]




CIT_D_4(1ZC2)
?
[Raw transfer]




C9P_A_3(3BM6)
AMPC_ECOLI
[Raw transfer]




GV9_A_3(3GV9)
AMPC_ECOLI
[Raw transfer]




CAZ_A_4(1IEL)
AMPC_ECOLI
[Raw transfer]




ETP_A_6(1GA9)
AMPC_ECOLI
[Raw transfer]




MOX_A_3(1FCO)
AMPC_ECOLI
[Raw transfer]




CIT_C_3(1ZC2)
?
[Raw transfer]




ZX0_A_2(2WZX)
AMPC_PSEAE
[Raw transfer]




3GV_A_7(3GVB)
AMPC_ECOLI
[Raw transfer]




STC_A_3(1L2S)
AMPC_ECOLI
[Raw transfer]




CB4_A_4(1IEM)
AMPC_ECOLI
[Raw transfer]




GF1_B_16(3GSG)
AMPC_ECOLI
[Raw transfer]




APB_B_4(3BLS)
AMPC_ECOLI
[Raw transfer]




BZB_A_3(1C3B)
AMPC_ECOLI
[Raw transfer]




APB_A_3(3BLS)
AMPC_ECOLI
[Raw transfer]




GTC_B_7(3GTC)
AMPC_ECOLI
[Raw transfer]




GV9_B_8(3GV9)
AMPC_ECOLI
[Raw transfer]




NPB_A_3(1KDS)
AMPC_ECOLI
[Raw transfer]




G14_B_12(3GRJ)
AMPC_ECOLI
[Raw transfer]




GF4_A_3(3GR2)
AMPC_ECOLI
[Raw transfer]




4CB_A_4(1KDW)
AMPC_ECOLI
[Raw transfer]




BDB_A_4(1KE3)
AMPC_ECOLI
[Raw transfer]




GTC_A_4(3GTC)
AMPC_ECOLI
[Raw transfer]




CVB_A_4(1KE0)
AMPC_ECOLI
[Raw transfer]




GF7_A_5(3GQZ)
AMPC_ECOLI
[Raw transfer]




MPD_A_3(1RGY)
AMPC_CITFR
[Raw transfer]




AZR_A_3(1FR6)
?
[Raw transfer]




DMS_B_13(3GSG)
AMPC_ECOLI
[Raw transfer]




1 PsiBlast_PDB 97.9797% -94 - C2 -1RGY 4.3 AMPC_CITFR
21 PsiBlast_CBE 97.1395% -98 - C2 -1ZC2 4.2 ?
4 PsiBlast_PDB 96.7294% -95 - C2 -1FR6 3.8 ?
2 PsiBlast_PDB 96.4995% -94 - C2 -1ZC2 3.4 ?
22 PsiBlast_CBE 96.1094% -93 - C2 -1FR6 3.7 ?
40 PsiBlast_CBE 92.7677% -97 - C2 -3O88 4.2 AMPC_ECOLI
39 PsiBlast_CBE 92.0277% -95 - C2 -4E3I 5.3 AMPC_ECOLI
58 PsiBlast_CBE 91.9677% -93 - C2 -3BM6 5.6 AMPC_ECOLI
26 PsiBlast_CBE 91.9077% -96 - C2 -4E3O 3.8 AMPC_ECOLI
50 PsiBlast_CBE 91.8577% -93 - C2 -3GTC 2.6 AMPC_ECOLI
54 PsiBlast_CBE 91.8177% -95 - C2 -3GRJ 3.6 AMPC_ECOLI
44 PsiBlast_CBE 91.8077% -96 - C2 -3O86 3.9 AMPC_ECOLI
24 PsiBlast_CBE 91.7777% -95 - C2 -1PI5 - AMPC_ECOLI
12 PsiBlast_PDB 91.7477% -94 - C2 -1IEM 3.9 AMPC_ECOLI
34 PsiBlast_CBE 91.6977% -94 - C2 -4E3K 4.5 AMPC_ECOLI
29 PsiBlast_CBE 91.6777% -93 - C2 -4E3N 5.0 AMPC_ECOLI
18 PsiBlast_PDB 91.6777% -93 - C2 -1KE3 3.7 AMPC_ECOLI
30 PsiBlast_CBE 91.6677% -94 - C2 -4E3M - AMPC_ECOLI
42 PsiBlast_CBE 91.6277% -94 - C2 -3O87 4.1 AMPC_ECOLI
36 PsiBlast_CBE 91.6277% -95 - C2 -4E3J 4.3 AMPC_ECOLI
28 PsiBlast_CBE 91.6277% -95 - C2 -4E3N 5.0 AMPC_ECOLI
41 PsiBlast_CBE 91.4977% -94 - C2 -3O88 4.9 AMPC_ECOLI
35 PsiBlast_CBE 91.4977% -94 - C2 -4E3K 4.8 AMPC_ECOLI
37 PsiBlast_CBE 91.4477% -99 - C2 -4E3J 4.4 AMPC_ECOLI
31 PsiBlast_CBE 91.4477% -93 - C2 -4E3M 5.0 AMPC_ECOLI
33 PsiBlast_CBE 91.4077% -94 - C2 -4E3L 4.7 AMPC_ECOLI
52 PsiBlast_CBE 91.3677% -94 - C2 -3GSG 3.5 AMPC_ECOLI
10 PsiBlast_PDB 91.3377% -98 - C2 -1FCO 3.3 AMPC_ECOLI
15 PsiBlast_PDB 91.3277% -93 - C2 -1KDS 2.8 AMPC_ECOLI
16 PsiBlast_PDB 91.3077% -93 - C2 -1KDW 3.0 AMPC_ECOLI
45 PsiBlast_CBE 91.2877% -97 - C2 -3O86 3.3 AMPC_ECOLI
38 PsiBlast_CBE 91.2377% -94 - C2 -4E3I 5.3 AMPC_ECOLI
59 PsiBlast_CBE 91.2277% -94 - C2 -3BM6 5.4 AMPC_ECOLI
27 PsiBlast_CBE 91.2177% -94 - C2 -4E3O 2.9 AMPC_ECOLI
57 PsiBlast_CBE 91.1977% -92 - C2 -3GQZ 3.5 AMPC_ECOLI
32 PsiBlast_CBE 91.1477% -94 - C2 -4E3L - AMPC_ECOLI
43 PsiBlast_CBE 91.1277% -97 - C2 -3O87 4.0 AMPC_ECOLI
51 PsiBlast_CBE 91.1077% -93 - C2 -3GTC 2.7 AMPC_ECOLI
60 PsiBlast_CBE 91.0977% -93 - C2 -3BLS 3.5 AMPC_ECOLI
48 PsiBlast_CBE 91.0777% -93 - C2 -3GV9 2.9 AMPC_ECOLI
17 PsiBlast_PDB 91.0777% -93 - C2 -1KE0 3.3 AMPC_ECOLI
13 PsiBlast_PDB 91.0777% -92 - C2 -1GA9 5.2 AMPC_ECOLI
9 PsiBlast_PDB 91.0077% -92 - C2 -1C3B 4.3 AMPC_ECOLI
8 PsiBlast_PDB 90.9277% -93 - C2 -3BLS 2.4 AMPC_ECOLI
20 PsiBlast_PDB 90.8577% -96 - C2 -1L2S 4.4 AMPC_ECOLI
11 PsiBlast_PDB 90.8077% -93 - C2 -1IEL 3.8 AMPC_ECOLI
25 PsiBlast_CBE 90.7177% -94 - C2 -1PI4 4.4 AMPC_ECOLI
47 PsiBlast_CBE 90.6877% -92 - C2 -3GVB 2.5 AMPC_ECOLI
49 PsiBlast_CBE 90.6477% -92 - C2 -3GV9 2.8 AMPC_ECOLI
5 PsiBlast_PDB 90.2577% -90 - C2 -1PI4 4.2 AMPC_ECOLI
53 PsiBlast_CBE 90.0977% -91 - C2 -3GSG - AMPC_ECOLI
56 PsiBlast_CBE 90.0677% -91 - C2 -3GR2 4.0 AMPC_ECOLI
6 PsiBlast_PDB 89.6977% -90 - C2 -1PI5 4.2 AMPC_ECOLI
72 HHSearch 77.9843% -86 - C2 -2WZX 3.7 AMPC_PSEAE
73 HHSearch 77.1943% -89 - C2 -1ZKJ - ?